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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 87642624-87642625 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM748509 HepG2 Epithelium Liver DNase [Search on ENCODE]
GSM1036260 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM646563 H7 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM646567 K562 Erythroblast Bone Marrow DNase [Search on ENCODE]
GSM646559 HepG2 Epithelium Liver DNase [Search on ENCODE]
GSM909313 H1 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM909311 iPS DF 19.11 iPSC Foreskin DNase [Search on ENCODE]
GSM909314 H1 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM816662 HepG2 Epithelium Liver DNase [Search on ENCODE]
GSM906382 H1 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM1027348 None Epithelium Fetal Small Intestine DNase [Search on ENCODE]
GSM1027306 None None Fetal Ovary DNase [Search on ENCODE]
GSM1014510 None Fibroblast Connective Tissue DNase [Search on ENCODE]
GSM1014513 NB4 Promyelocytic cell Blood DNase [Search on ENCODE]
GSM723023 None Epithelium Fetal Heart DNase [Search on ENCODE]
GSM736610 H7 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM736638 H7 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM1024754 H7 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM1024758 H7 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM736637 HepG2 Epithelium Liver DNase [Search on ENCODE]
GSM736630 None Epithelium None DNase [Search on ENCODE]
GSM736623 None Epithelium None DNase [Search on ENCODE]
GSM736495 WERI-Rb-1 None Eye DNase [Search on ENCODE]
GSM736636 WERI-Rb-1 None Eye DNase [Search on ENCODE]
GSM1782765 K562 Erythroblast Bone Marrow ATAC-seq [Search on ENCODE]
GSM1817205 None Neural crest cell Cranial ATAC-seq [Search on ENCODE]
GSM2257299 H7 Embryonic Stem Cell Embryo ATAC-seq [Search on ENCODE]
GSM2257300 H7 Embryonic Stem Cell Embryo ATAC-seq [Search on ENCODE]
GSM2035706 None Hematopoietic stem and progenitor cell None ATAC-seq [Search on ENCODE]
ENCSR148VUP_2 None Haematopoietic Progenitor Cell Blood DNase [Search on ENCODE]
ENCSR705CNJ_2 None None Heart DNase [Search on ENCODE]
ENCSR814KRX_2 HT29 None Colon DNase [Search on ENCODE]
ENCSR004SUL_2 None iPSC None DNase [Search on ENCODE]
ENCSR636VCX_1 K562 Erythroblast Bone Marrow DNase [Search on ENCODE]
ENCSR622RJN_2 K562 Erythroblast Bone Marrow DNase [Search on ENCODE]
ENCSR000FFJ SJCRH30 Fibroblast Muscle DNase [Search on ENCODE]
ENCSR017OZH_1 None Embryonic Stem Cell None DNase [Search on ENCODE]
ENCSR017OZH_2 None Embryonic Stem Cell None DNase [Search on ENCODE]
ENCSR560CCF_1 K562 Erythroblast Bone Marrow DNase [Search on ENCODE]
ENCSR560CCF_2 K562 Erythroblast Bone Marrow DNase [Search on ENCODE]
ENCSR605SNG_1 K562 Erythroblast Bone Marrow DNase [Search on ENCODE]
ENCSR621ENC_3 None None Retina DNase [Search on ENCODE]
ENCSR643OAB_1 K562 Erythroblast Bone Marrow DNase [Search on ENCODE]
ENCSR678ILN_2 None Stem cell None DNase [Search on ENCODE]
ENCSR754LIN_1 None Embryonic Stem Cell None DNase [Search on ENCODE]
ENCSR964WHY_2 None Embryonic Stem Cell None DNase [Search on ENCODE]
GSM2243034 Gen2.2 Plasmacytoid dendritic cell None ATAC-seq [Search on ENCODE]
GSM2544231 THP-1 Macrophage None ATAC-seq [Search on ENCODE]
GSM2544225 THP-1 Monocyte None ATAC-seq [Search on ENCODE]
GSM2544222 THP-1 Macrophage None ATAC-seq [Search on ENCODE]
GSM2544218 THP-1 Macrophage None ATAC-seq [Search on ENCODE]
GSM2241148 T47D Epithelium Mammary Gland ATAC-seq [Search on ENCODE]
GSM2386582 H1 Embryonic Stem Cell Embryo ATAC-seq [Search on ENCODE]
GSM2386576 H1 Embryonic Stem Cell Embryo ATAC-seq [Search on ENCODE]
GSM2636206 None Embryonic Stem Cell None ATAC-seq [Search on ENCODE]
GSM2636207 None Embryonic Stem Cell None ATAC-seq [Search on ENCODE]
GSM2898816 None Stem cell None ATAC-seq [Search on ENCODE]
GSM2898818 None Stem cell None ATAC-seq [Search on ENCODE]
GSM2264815 C20 hiPSC-derived cells None ATAC-seq [Search on ENCODE]
GSM2264819 None hESC None ATAC-seq [Search on ENCODE]
GSM2264831 None hESC None ATAC-seq [Search on ENCODE]
GSM2845469 RUES2 Embryonic Stem Cell None ATAC-seq [Search on ENCODE]
GSM2898831 None Stem cell None ATAC-seq [Search on ENCODE]
GSM2898832 None Stem cell None ATAC-seq [Search on ENCODE]
GSM2898811 None Stem cell None ATAC-seq [Search on ENCODE]
GSM2898815 None Stem cell None ATAC-seq [Search on ENCODE]
GSM2898783 None Stem cell None ATAC-seq [Search on ENCODE]
GSM2898781 None Stem cell None ATAC-seq [Search on ENCODE]
GSM2898784 None Stem cell None ATAC-seq [Search on ENCODE]
GSM2898848 None Cardiomyocyte None ATAC-seq [Search on ENCODE]
GSM2898850 None Cardiomyocyte None ATAC-seq [Search on ENCODE]
GSM2898851 None Cardiomyocyte None ATAC-seq [Search on ENCODE]
GSM2264805 C15 hiPSC-derived cells None ATAC-seq [Search on ENCODE]
GSM2264826 None hESC None ATAC-seq [Search on ENCODE]
GSM2264821 None hESC None ATAC-seq [Search on ENCODE]
GSM2845470 RUES2 Mesodermal Cell None ATAC-seq [Search on ENCODE]
GSM2898828 None Stem cell None ATAC-seq [Search on ENCODE]
GSM2898829 None Stem cell None ATAC-seq [Search on ENCODE]
GSM2898824 None Stem cell None ATAC-seq [Search on ENCODE]
GSM2898804 None Stem cell None ATAC-seq [Search on ENCODE]
GSM2898805 None Stem cell None ATAC-seq [Search on ENCODE]
GSM2898806 None Stem cell None ATAC-seq [Search on ENCODE]
GSM2898802 None Stem cell None ATAC-seq [Search on ENCODE]
GSM2898798 None Stem cell None ATAC-seq [Search on ENCODE]
GSM2898792 None Stem cell None ATAC-seq [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.