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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 161032925-161032926 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM986063 MCF-7 Epithelium Breast ESR1 [Search on ENCODE]
GSM1198713 MCF-7 Epithelium Breast ESR1 [Search on ENCODE]
GSM798427 None Epithelium Mammary Gland ESR1 [Search on ENCODE]
GSM798434 MCF-7 Epithelium Breast ESR1 [Search on ENCODE]
GSM798425 MCF-7 Epithelium Breast ESR1 [Search on ENCODE]
GSM935551 MCF-10A Epithelium Breast STAT3 [Search on ENCODE]
GSM1122847 None Epithelium Mammary Gland FAIRE [Search on ENCODE]
GSM733767 GM12878 B Lymphocyte Blood H2AZ [Search on ENCODE]
GSM1003529 NHLF Fibroblast Lung EZH2 [Search on ENCODE]
GSM935500 HeLa-S3 Epithelium Cervix EP300 [Search on ENCODE]
GSM935555 HeLa-S3 Epithelium Cervix PRDM1 [Search on ENCODE]
GSM935457 MCF-10A Epithelium Breast STAT3 [Search on ENCODE]
GSM935398 MCF-10A Epithelium Breast FOS [Search on ENCODE]
GSM935491 MCF-10A Epithelium Breast MYC [Search on ENCODE]
GSM935399 MCF-10A Epithelium Breast STAT3 [Search on ENCODE]
GSM935396 MCF-10A Epithelium Breast FOS [Search on ENCODE]
GSM935397 MCF-10A Epithelium Breast FOS [Search on ENCODE]
GSM935643 NB4 Promyelocytic cell Blood MYC [Search on ENCODE]
GSM1010893 GM12878 B Lymphocyte Blood RUNX3 [Search on ENCODE]
GSM1250897 AGS Epithelium Stomach GATA6 [Search on ENCODE]
GSM1566729 None Adipocyte None MED1 [Search on ENCODE]
GSM1678029 PC-3 Epithelium Prostate DAXX [Search on ENCODE]
GSM1684641 None Mesenchymal Stem Cell None CEBPB [Search on ENCODE]
GSM1684643 None Mesenchymal Stem Cell None CEBPB [Search on ENCODE]
GSM1893926 MOLM-14 Myeloid Cell None CDK8 [Search on ENCODE]
GSM1893928 MOLM-14 Myeloid Cell None CDK8 [Search on ENCODE]
GSM1901547 NB4 Promyelocytic cell Blood JMJD1C [Search on ENCODE]
ENCSR098YLE_1 HEK293 Epithelium Embryonic Kidney PRDM1 [Search on ENCODE]
ENCSR098YLE_2 HEK293 Epithelium Embryonic Kidney PRDM1 [Search on ENCODE]
ENCSR423RTK_1 MCF-7 Epithelium Breast GATA3 [Search on ENCODE]
ENCSR874AFU_2 GM12878 B Lymphocyte Blood IKZF1 [Search on ENCODE]
GSM631456 MCF-7 Epithelium Breast ESR1 [Search on ENCODE]
GSM631473 T47D Epithelium Mammary Gland FOXA1 [Search on ENCODE]
GSM1856031 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1856030 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1856012 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1855971 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1855970 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1855969 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1574274 CFPAC-1 None Pancreatic ductal FOXA1 [Search on ENCODE]
GSM1858642 ZR-75-1 Embryonic Stem Cell Breast FOXA1 [Search on ENCODE]
GSM1858637 ZR-75-1 Embryonic Stem Cell Breast ESR1 [Search on ENCODE]
GSM2179743 NB4 Leukemic cells None RUNX1 [Search on ENCODE]
GSM1527696 None Th1 None POLR2A [Search on ENCODE]
GSM2257829 MCF-7 None Breast ESR1 [Search on ENCODE]
GSM2257828 MCF-7 None Breast ESR1 [Search on ENCODE]
GSM2330568 SUM159PT None Breast CEBPB [Search on ENCODE]
GSM2242433 T47D None Breast FOXA1 [Search on ENCODE]
GSM2467221 MCF-7 None Mammary Gland ESR1 [Search on ENCODE]
GSM2359436 A375 melanoma Skin BRD4 [Search on ENCODE]
GSM2670870 LTED None Breast ESR1 [Search on ENCODE]
GSM2401446 BJ Fibroblast Skin FOXA2 [Search on ENCODE]
GSM2797099 None None Breast ESR1 [Search on ENCODE]
GSM2970403 MCF-7 Epithelium Breast ESR1 [Search on ENCODE]
GSM2970409 MCF-7 Epithelium Breast ESR1 [Search on ENCODE]
GSM2409676 TTC1240 None Malignant rhabdoid tumor SMARCB1 [Search on ENCODE]
GSM2915383 MCF-7 Epithelium Breast ESR1 [Search on ENCODE]
GSM2670869 SUM44 None Breast ESR1 [Search on ENCODE]
GSM2401453 BJ Fibroblast Skin GATA4 [Search on ENCODE]
GSM2278009 MDA-MB-468 mDA None STAT3 [Search on ENCODE]
GSM2970413 MCF-7 Epithelium Breast ESR1 [Search on ENCODE]
GSM2430674 BJ Fibroblast Skin FOXA2 [Search on ENCODE]
GSM2430676 BJ Fibroblast Skin GATA4 [Search on ENCODE]
GSM2409708 TTC1240 None Malignant rhabdoid tumor SS18 [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.