Home
Virus
Gene
Disease
Dataset
Download
Help
 
HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 161032925-161032926 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM665799 None None Fetal Adrenal Gland DNase [Search on ENCODE]
GSM530653 None None Fetal Adrenal Gland DNase [Search on ENCODE]
GSM623517 NHEK Keratinocyte Skin DNase [Search on ENCODE]
GSM1024609 None Epithelium Mammary Gland DNase [Search on ENCODE]
GSM778665 GM18499 Lymphoblastoid None DNase [Search on ENCODE]
GSM646560 None Epithelium Amnion DNase [Search on ENCODE]
GSM646561 None Epithelium Mammary Gland DNase [Search on ENCODE]
GSM753974 None Epithelium Mammary Gland DNase [Search on ENCODE]
GSM753973 None Epithelium Mammary Gland DNase [Search on ENCODE]
GSM878658 None None Fetal Adrenal Gland DNase [Search on ENCODE]
GSM816665 GM12878 B Lymphocyte Blood DNase [Search on ENCODE]
GSM816648 GM19240 Lymphoblastoid Blood DNase [Search on ENCODE]
GSM816656 GM12891 Lymphoblastoid Blood DNase [Search on ENCODE]
GSM816633 HeLa-S3 Epithelium Cervix DNase [Search on ENCODE]
GSM1027311 None None Fetal Adrenal Gland DNase [Search on ENCODE]
GSM1027350 None Keratinocyte Foreskin DNase [Search on ENCODE]
GSM817195 None Keratinocyte Foreskin DNase [Search on ENCODE]
GSM817165 None None Fetal Adrenal Gland DNase [Search on ENCODE]
GSM817196 None Keratinocyte Foreskin DNase [Search on ENCODE]
GSM817167 None None Fetal Adrenal Gland DNase [Search on ENCODE]
GSM1014523 None T Lymphocyte Blood DNase [Search on ENCODE]
GSM1014511 None Epithelium Esophagus DNase [Search on ENCODE]
GSM1014515 None Myocyte Heart DNase [Search on ENCODE]
GSM1014520 None Epithelium None DNase [Search on ENCODE]
GSM1014522 None Th2 None DNase [Search on ENCODE]
GSM1014513 NB4 Promyelocytic cell Blood DNase [Search on ENCODE]
GSM1014538 M059J Glial Cell Brain DNase [Search on ENCODE]
GSM723023 None Epithelium Fetal Heart DNase [Search on ENCODE]
GSM774203 None Epithelium Fetal Heart DNase [Search on ENCODE]
GSM849025 None Epithelium Lung DNase [Search on ENCODE]
GSM849027 None Cortex Kidney DNase [Search on ENCODE]
GSM736620 GM12878 B Lymphocyte Blood DNase [Search on ENCODE]
GSM736606 None Epithelium Amnion DNase [Search on ENCODE]
GSM736631 None Epithelium Amnion DNase [Search on ENCODE]
GSM736532 None Epithelium Esophagus DNase [Search on ENCODE]
GSM736510 HeLa-S3 Epithelium Cervix DNase [Search on ENCODE]
GSM736564 HeLa-S3 Epithelium Cervix DNase [Search on ENCODE]
GSM736634 None Epithelium Mammary Gland DNase [Search on ENCODE]
GSM736552 None Epithelium Mammary Gland DNase [Search on ENCODE]
GSM1024773 M059J Glial Cell Brain DNase [Search on ENCODE]
GSM1024794 M059J Glial Cell Brain DNase [Search on ENCODE]
GSM1024767 MCF-7 Epithelium Breast DNase [Search on ENCODE]
GSM1024783 MCF-7 Epithelium Breast DNase [Search on ENCODE]
GSM736604 NB4 Promyelocytic cell Blood DNase [Search on ENCODE]
GSM1024743 PrEC Epithelium Prostate DNase [Search on ENCODE]
GSM1024742 PrEC Epithelium Prostate DNase [Search on ENCODE]
GSM736608 SAEC Epithelium Lung DNase [Search on ENCODE]
GSM736502 None Th2 Blood DNase [Search on ENCODE]
GSM1024739 None Th2 Blood DNase [Search on ENCODE]
GSM1024744 None T Lymphocyte Blood DNase [Search on ENCODE]
GSM763533 HeLa Epithelium Cervix DNase [Search on ENCODE]
GSM1566739 None Adipocyte None DNase [Search on ENCODE]
GSM1581831 None Myeloid Cell None DNase [Search on ENCODE]
GSM1662255 None Epithelium Corneal Epithelium ATAC-seq [Search on ENCODE]
ENCSR940NLN_1 PC-9 Lung Cancer Cell Lung DNase [Search on ENCODE]
ENCSR940NLN_2 PC-9 Lung Cancer Cell Lung DNase [Search on ENCODE]
ENCSR873PLF_1 K562 Erythroblast Bone Marrow DNase [Search on ENCODE]
GSM2241150 T47D Epithelium Mammary Gland ATAC-seq [Search on ENCODE]
GSM489280 GM12891 Lymphoblastoid Blood DNase [Search on ENCODE]
GSM489284 GM19240 Lymphoblastoid Blood DNase [Search on ENCODE]
GSM489285 GM19240 Lymphoblastoid Blood DNase [Search on ENCODE]
GSM816635 NHEK Keratinocyte Skin DNase [Search on ENCODE]
GSM1930716 None Epithelium None DNase [Search on ENCODE]
GSM1858669 ZR-75-1 Embryonic Stem Cell Breast DNase [Search on ENCODE]
GSM2411165 Jurkat T Lymphocyte Blood ATAC-seq [Search on ENCODE]
GSM2411166 Jurkat T Lymphocyte Blood ATAC-seq [Search on ENCODE]
GSM2411167 Jurkat T Lymphocyte Blood ATAC-seq [Search on ENCODE]
GSM2676284 MCF-10A Epithelium Breast DNase [Search on ENCODE]
GSM2676285 MCF-10A Epithelium Breast DNase [Search on ENCODE]
GSM2676282 MCF-10A Epithelium Breast DNase [Search on ENCODE]
GSM2676283 MCF-10A Epithelium Breast DNase [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.