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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 89168999-89169260 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM759665 LNCaP Epithelium Prostate H3K4me2 [Search on ENCODE]
GSM1249447 LNCaP Epithelium Prostate H3K27ac [Search on ENCODE]
GSM1296640 COLO-741 Epithelium Colon H3K27ac [Search on ENCODE]
GSM1340256 C4-2 Epithelium None H3K4me1 [Search on ENCODE]
GSM1484294 None Melanoma Cell None H3K27ac [Search on ENCODE]
GSM1484295 None Melanoma Cell None H3K27ac [Search on ENCODE]
GSM1484299 None Melanoma Cell None H3K27ac [Search on ENCODE]
GSM1846900 None Patient derived xenograft cells None H3K27ac [Search on ENCODE]
GSM1862987 LNCaP Epithelium Prostate H3K27ac [Search on ENCODE]
GSM1862988 LNCaP Epithelium Prostate H3K27ac [Search on ENCODE]
GSM1862989 LNCaP Epithelium Prostate H3K27ac [Search on ENCODE]
GSM1862990 LNCaP Epithelium Prostate H3K27ac [Search on ENCODE]
GSM1862991 LNCaP Epithelium Prostate H3K27ac [Search on ENCODE]
GSM1862993 LNCaP Epithelium Prostate H3K27ac [Search on ENCODE]
GSM1863001 LNCaP Epithelium Prostate H3K27ac [Search on ENCODE]
GSM1863002 LNCaP Epithelium Prostate H3K27ac [Search on ENCODE]
GSM1863003 LNCaP Epithelium Prostate H3K27ac [Search on ENCODE]
GSM1863004 LNCaP Epithelium Prostate H3K27ac [Search on ENCODE]
GSM1890757 COLO-741 None None H3K27ac [Search on ENCODE]
GSM1902615 LNCaP Epithelium Prostate H3K27ac [Search on ENCODE]
GSM1907214 LNCaP Epithelium Prostate H3K27ac [Search on ENCODE]
GSM1907213 LNCaP Epithelium Prostate H3K27ac [Search on ENCODE]
GSM1922078 None Free cell None H3K27ac [Search on ENCODE]
GSM1902616 LNCaP Epithelium Prostate H3K4me1 [Search on ENCODE]
GSM1846901 None Patient derived xenograft cells None H3K4me1 [Search on ENCODE]
GSM1846894 None Patient derived xenograft cells None H3K4me1 [Search on ENCODE]
GSM1846890 None Patient derived xenograft cells None H3K4me1 [Search on ENCODE]
GSM1862995 LNCaP Epithelium Prostate H3K27ac [Search on ENCODE]
GSM1862986 LNCaP Epithelium Prostate H3K27ac [Search on ENCODE]
GSM1615877 None Fibroblast Skin H1.0 [Search on ENCODE]
GSM1907212 LNCaP Epithelium Prostate H3K4me3 [Search on ENCODE]
GSM1907211 LNCaP Epithelium Prostate H3K4me3 [Search on ENCODE]
GSM2288220 None Astrocyte None H3K27me3 [Search on ENCODE]
GSM2498492 breast triple negative tumor cell line BCSC1 None Breast H3K9me3 [Search on ENCODE]
GSM2476350 501-Mel melanoma None H3K27ac [Search on ENCODE]
GSM2476348 None Melanocyte Foreskin H3K27ac [Search on ENCODE]
GSM1968285 SKMEL5 melanoma None H3K27ac [Search on ENCODE]
GSM1981420 LNCaP Epithelium Prostate H2AZac [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.