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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 89168999-89169260 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM1024610 None Melanocyte Foreskin DNase [Search on ENCODE]
GSM878665 None None Fetal Stomach DNase [Search on ENCODE]
GSM1027307 None Melanocyte Foreskin DNase [Search on ENCODE]
GSM1027312 None Melanocyte Foreskin DNase [Search on ENCODE]
GSM774244 None Melanocyte Foreskin DNase [Search on ENCODE]
GSM774243 None Melanocyte Foreskin DNase [Search on ENCODE]
GSM1255266 LNCaP Epithelium Prostate DNase [Search on ENCODE]
GSM736603 LNCaP Epithelium Prostate DNase [Search on ENCODE]
ENCSR000FEK_1 MEL Erythroid Progenitor Cell None DNase [Search on ENCODE]
ENCSR000FEK_2 MEL Erythroid Progenitor Cell None DNase [Search on ENCODE]
GSM2575304 WM989 melanoma None ATAC-seq [Search on ENCODE]
GSM2575303 WM989 melanoma None ATAC-seq [Search on ENCODE]
GSM2575302 WM989 melanoma None ATAC-seq [Search on ENCODE]
GSM2575301 WM989 melanoma None ATAC-seq [Search on ENCODE]
GSM2575300 WM989 melanoma None ATAC-seq [Search on ENCODE]
GSM2476338 None Melanocyte Foreskin ATAC-seq [Search on ENCODE]
GSM2977484 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2430668 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2430669 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2476340 501-Mel melanoma None ATAC-seq [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.