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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 116553486-116553487 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM602291 H9 Embryonic Stem Cell Embryo EP300 [Search on ENCODE]
GSM730704 None Endothelial Cell Umbilical Vein FOS [Search on ENCODE]
GSM454599 IMR90 Fibroblast Lung SNAPC2 [Search on ENCODE]
GSM610337 K562 Erythroblast Bone Marrow FOS [Search on ENCODE]
GSM610336 K562 Erythroblast Bone Marrow FOS [Search on ENCODE]
GSM602298 H9 Embryonic Stem Cell Embryo FAIRE [Search on ENCODE]
GSM631504 MCF-7 Epithelium Breast FAIRE [Search on ENCODE]
GSM959052 FLP76 Epithelium Embryonic Kidney ZNF76 [Search on ENCODE]
GSM808755 MCF-7 Epithelium Breast MYC [Search on ENCODE]
GSM1067275 None Erythroid Cell None KLF1 [Search on ENCODE]
GSM1162752 HCT-116 None Colon POLR2A [Search on ENCODE]
GSM1057013 None Monocyte Blood STAT1 [Search on ENCODE]
GSM1003500 None Epithelium Mammary Gland H2AZ [Search on ENCODE]
GSM1003488 NHEK Keratinocyte Skin H2AZ [Search on ENCODE]
GSM935434 H1 Embryonic Stem Cell Embryo JUND [Search on ENCODE]
GSM935585 None Endothelial Cell Umbilical Vein FOS [Search on ENCODE]
GSM935397 MCF-10A Epithelium Breast FOS [Search on ENCODE]
GSM935438 MCF-10A Epithelium Breast FOS [Search on ENCODE]
GSM803532 GM12878 B Lymphocyte Blood PBX3 [Search on ENCODE]
GSM803542 H1 Embryonic Stem Cell Embryo EP300 [Search on ENCODE]
GSM803484 H1 Embryonic Stem Cell Embryo POLR2A [Search on ENCODE]
GSM803529 H1 Embryonic Stem Cell Embryo JUND [Search on ENCODE]
GSM1010756 HCT-116 None Colon FOSL1 [Search on ENCODE]
GSM1010847 HCT-116 None Colon JUND [Search on ENCODE]
GSM1010887 SK-N-SH Neuroblastoma cell Brain PBX3 [Search on ENCODE]
GSM1246716 NCI-H441 Epithelium Lung TTF1 [Search on ENCODE]
GSM1369948 MCF-7 Epithelium Breast CBX5 [Search on ENCODE]
GSM1544525 None Epithelium None SPI1 [Search on ENCODE]
GSM1495450 None T Lymphocyte None PSIP1 [Search on ENCODE]
GSM602297 H9 Embryonic Stem Cell Embryo SMARCA4 [Search on ENCODE]
GSM1579346 None Embryonic Stem Cell None CTNNB1 [Search on ENCODE]
GSM1670708 HuCCT1 None None SMC1A [Search on ENCODE]
GSM1670709 HuCCT1 None None SMC1A [Search on ENCODE]
GSM1080931 Nalm6 B cell precursor Blood IKZF1 [Search on ENCODE]
ENCSR115SMW_1 K562 Erythroblast Bone Marrow PKNOX1 [Search on ENCODE]
ENCSR115SMW_2 K562 Erythroblast Bone Marrow PKNOX1 [Search on ENCODE]
ENCSR199WXF_2 GM12878 B Lymphocyte Blood EED [Search on ENCODE]
ENCSR849DFF_2 HepG2 Epithelium Liver PBX2 [Search on ENCODE]
GSM1701825 None hESC None SOX2 [Search on ENCODE]
GSM1919986 CFPAC-1 None Pancreatic ductal ELF3 [Search on ENCODE]
GSM1919984 CFPAC-1 None Pancreatic ductal KLF5 [Search on ENCODE]
GSM1574273 CFPAC-1 None Pancreatic ductal ELF3 [Search on ENCODE]
GSM2042907 HT29 colorectal adenocarcinoma None POLR2A [Search on ENCODE]
GSM2042900 HT29 colorectal adenocarcinoma None POLR2A [Search on ENCODE]
GSM1420199 None B cell precursor None IKZF1 [Search on ENCODE]
GSM1420194 None B cell precursor None IKZF1 [Search on ENCODE]
GSM1420193 None B cell precursor None IKZF1 [Search on ENCODE]
GSM2310996 A549 Epithelium Lung NKX2-1 [Search on ENCODE]
GSM2574796 GM12878 B Lymphocyte Blood ETV6 [Search on ENCODE]
GSM2266286 None Epithelium None EHF [Search on ENCODE]
GSM2419826 Detroit 562 Detroit 562 cells None RELA [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.