Home
Virus
Gene
Disease
Dataset
Download
Help
 
HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 116553486-116553487 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM537668 hES I3 Embryonic Stem Cell Embryo H3K4me1 [Search on ENCODE]
GSM669891 HUES6 Embryonic Stem Cell Embryo H3K4me1 [Search on ENCODE]
GSM669885 HUES6 Embryonic Stem Cell Embryo H3K4me1 [Search on ENCODE]
GSM669966 HUES64 Embryonic Stem Cell Embryo H3K4me1 [Search on ENCODE]
GSM706073 iPS DF 6.9 iPSC None H3K4me1 [Search on ENCODE]
GSM594607 MCF-7 Epithelium Breast H3K4me2 [Search on ENCODE]
GSM958155 None Keratinocyte Foreskin H3K4me3 [Search on ENCODE]
GSM910573 None None Esophagus H3K4me1 [Search on ENCODE]
GSM646468 NHEK Keratinocyte Skin H3K9ac [Search on ENCODE]
GSM646465 NHEK Keratinocyte Skin H3K4me2 [Search on ENCODE]
GSM646456 NHEK Keratinocyte Skin H3K27ac [Search on ENCODE]
GSM646464 NHEK Keratinocyte Skin H3K4me2 [Search on ENCODE]
GSM646467 NHEK Keratinocyte Skin H3K4me3 [Search on ENCODE]
GSM646344 H1 Embryonic Stem Cell Embryo H3K4me2 [Search on ENCODE]
GSM646383 None Epithelium Mammary Gland H3K4me2 [Search on ENCODE]
GSM646384 None Epithelium Mammary Gland H3K4me3 [Search on ENCODE]
GSM950850 UKE-1 Leukemia Cell None H3K4me3 [Search on ENCODE]
GSM950844 UKE-1 Leukemia Cell None H3K4me3 [Search on ENCODE]
GSM941736 None Keratinocyte Foreskin H3K4me1 [Search on ENCODE]
GSM941735 None Keratinocyte Foreskin H3K4me3 [Search on ENCODE]
GSM1127080 UCSF-4* Embryonic Stem Cell Embryo H3K4me1 [Search on ENCODE]
GSM1272755 BG01 Embryonic Stem Cell Embryo H3K4me1 [Search on ENCODE]
GSM995358 None Monocyte Blood H3K4me1 [Search on ENCODE]
GSM1056946 None T Lymphocyte Blood H3K4me1 [Search on ENCODE]
GSM733670 H1 Embryonic Stem Cell Embryo H3K4me2 [Search on ENCODE]
GSM733654 None Epithelium Mammary Gland H3K4me2 [Search on ENCODE]
GSM733660 None Epithelium Mammary Gland H3K27ac [Search on ENCODE]
GSM733712 None Epithelium Mammary Gland H3K4me3 [Search on ENCODE]
GSM733698 NHEK Keratinocyte Skin H3K4me1 [Search on ENCODE]
GSM733674 NHEK Keratinocyte Skin H3K27ac [Search on ENCODE]
GSM733686 NHEK Keratinocyte Skin H3K4me2 [Search on ENCODE]
GSM733665 NHEK Keratinocyte Skin H3K9ac [Search on ENCODE]
GSM1122654 MCF-7 Epithelium Breast H3K4me2 [Search on ENCODE]
GSM1122665 SUM159PT Epithelium Mammary Gland H3K4me2 [Search on ENCODE]
GSM1399262 H1 Embryonic Stem Cell Embryo H3K4me1 [Search on ENCODE]
GSM1399263 H1 Embryonic Stem Cell Embryo H3K4me1 [Search on ENCODE]
GSM1519137 None None Tonsil H3 [Search on ENCODE]
GSM1316303 CyT49 Embryonic Stem Cell Embryo H3K4me1 [Search on ENCODE]
GSM1501175 None Neuroepithelial-like stem cell None H3K4me1 [Search on ENCODE]
GSM1565794 None Dendritic Cell None H3K27ac [Search on ENCODE]
GSM1565808 None Dendritic Cell None H3K27ac [Search on ENCODE]
GSM1565812 None Dendritic Cell None H3K4me3 [Search on ENCODE]
GSM1918575 K562 Erythroblast Bone Marrow H3K27ac [Search on ENCODE]
GSM1702515 None None Bone Marrow H3K9ac [Search on ENCODE]
GSM2042878 HT29 None Colon H3K27ac [Search on ENCODE]
GSM2042882 HT29 None Colon H3K27ac [Search on ENCODE]
GSM818023 H1 Embryonic Stem Cell Embryo H3K18ac [Search on ENCODE]
GSM818052 H1 Embryonic Stem Cell Embryo H3K9ac [Search on ENCODE]
GSM772789 hES I3 Embryonic Stem Cell Embryo H3K4me1 [Search on ENCODE]
GSM2572315 None Keratinocyte Foreskin H3K27ac [Search on ENCODE]
GSM2572314 None Keratinocyte Foreskin H3K27ac [Search on ENCODE]
GSM2572313 None Keratinocyte Foreskin H3K27ac [Search on ENCODE]
GSM1892632 None None Snap-frozen tissue H3K4me2 [Search on ENCODE]
GSM1666383 NHEK Keratinocyte Skin H3K4me1 [Search on ENCODE]
GSM1816327 None Hematopoietic stem and progenitor cell None H3K4me1 [Search on ENCODE]
GSM1816323 None None Umbilical Cord H3K4me1 [Search on ENCODE]
GSM1816322 None None Umbilical Cord H3K4me3 [Search on ENCODE]
GSM1832641 ZR-75-30 None None H3K4me1 [Search on ENCODE]
GSM2175577 HCT-116 Human colorectal tumor None H3K4me2 [Search on ENCODE]
GSM1607388 None Stem cell Foreskin H3K4me3 [Search on ENCODE]
GSM2308949 HeLa Epithelium Cervix H3K9me3 [Search on ENCODE]
GSM2067522 MCF-7 None Breast H3K27ac [Search on ENCODE]
GSM2067521 MCF-7 None Breast H3K27ac [Search on ENCODE]
GSM2067519 MCF-7 None Breast H3K4me1 [Search on ENCODE]
GSM2067517 MCF-7 None Breast H3K4me1 [Search on ENCODE]
GSM2442787 None Endothelial Cell Umbilical Vein H3K4me1 [Search on ENCODE]
GSM1617371 None None Snap-frozen tissue H3K4me2 [Search on ENCODE]
GSM2029367 H9 Embryonic Stem Cell Embryo H3K4me1 [Search on ENCODE]
GSM2029352 H9 Embryonic Stem Cell Embryo H3K4me1 [Search on ENCODE]
GSM2058085 V855 None None H3K4me1 [Search on ENCODE]
GSM2035821 NHEK Keratinocyte Skin H3K4me1 [Search on ENCODE]
GSM2035813 NHEK Keratinocyte Skin H3K4me1 [Search on ENCODE]
GSM1846179 None Granulocyte Blood H3K4me2 [Search on ENCODE]
GSM2476260 MCF-7 None Breast H3K4me2 [Search on ENCODE]
GSM2476259 MCF-7 None Breast H3K4me2 [Search on ENCODE]
GSM2476258 MCF-7 None Breast H3K4me2 [Search on ENCODE]
GSM2550263 None Stem cell None H3 [Search on ENCODE]
GSM2816752 None Epithelium None H3K27ac [Search on ENCODE]
GSM2712764 HCT-116 None HCT116 H3K4me1 [Search on ENCODE]
GSM2766560 None Epithelium None H3K4me3 [Search on ENCODE]
GSM2247244 None Keratinocyte None H3K27ac [Search on ENCODE]
GSM773043 None Haematopoietic Progenitor Cell Cord blood H3K4me1 [Search on ENCODE]
GSM2550207 None Stem cell None H3 [Search on ENCODE]
GSM1914982 143B Osteosarcoma cell None H3K4me1 [Search on ENCODE]
GSM2258694 76NF2V None Breast H3K4me3 [Search on ENCODE]
GSM2550221 None Stem cell None H3 [Search on ENCODE]
GSM2060768 PrEC Epithelium Prostate H3K27ac [Search on ENCODE]
GSM2496166 None Keratinocyte None H3K27ac [Search on ENCODE]
GSM2359492 RT112 Epithelium Urinary Bladder H3K27ac [Search on ENCODE]
GSM2550186 None Stem cell None H3 [Search on ENCODE]
GSM434762 H1 Embryonic Stem Cell Embryo H3K4me1 [Search on ENCODE]
GSM602261 H1 Embryonic Stem Cell Embryo H3K4me2 [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.