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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 116553486-116553487 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM665801 iPS DF 19.11 iPSC Foreskin DNase [Search on ENCODE]
GSM665803 iPS DF 4.7 iPSC None DNase [Search on ENCODE]
GSM701541 None Monocyte Blood DNase [Search on ENCODE]
GSM701503 None Monocyte Blood DNase [Search on ENCODE]
GSM665840 None Monocyte Blood DNase [Search on ENCODE]
GSM623513 H1 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM623517 NHEK Keratinocyte Skin DNase [Search on ENCODE]
GSM646563 H7 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM909311 iPS DF 19.11 iPSC Foreskin DNase [Search on ENCODE]
GSM1102736 None Monocyte Blood DNase [Search on ENCODE]
GSM816632 H1 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM816629 None Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM1027350 None Keratinocyte Foreskin DNase [Search on ENCODE]
GSM817194 None Keratinocyte Foreskin DNase [Search on ENCODE]
GSM817197 None Keratinocyte Foreskin DNase [Search on ENCODE]
GSM817196 None Keratinocyte Foreskin DNase [Search on ENCODE]
GSM1014535 RPMI-7951 Melanoma Cell Skin DNase [Search on ENCODE]
GSM1014511 None Epithelium Esophagus DNase [Search on ENCODE]
GSM1014538 M059J Glial Cell Brain DNase [Search on ENCODE]
GSM849025 None Epithelium Lung DNase [Search on ENCODE]
GSM849027 None Cortex Kidney DNase [Search on ENCODE]
GSM736496 GM12878 B Lymphocyte Blood DNase [Search on ENCODE]
GSM736610 H7 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM736638 H7 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM736493 HCT-116 None Colon DNase [Search on ENCODE]
GSM736532 None Epithelium Esophagus DNase [Search on ENCODE]
GSM736626 HL-60 Promyeloblast Blood DNase [Search on ENCODE]
GSM736548 HRE Epithelium None DNase [Search on ENCODE]
GSM1024773 M059J Glial Cell Brain DNase [Search on ENCODE]
GSM1024794 M059J Glial Cell Brain DNase [Search on ENCODE]
GSM736588 MCF-7 Epithelium Breast DNase [Search on ENCODE]
GSM1024764 MCF-7 Epithelium Breast DNase [Search on ENCODE]
GSM1024767 MCF-7 Epithelium Breast DNase [Search on ENCODE]
GSM1024784 MCF-7 Epithelium Breast DNase [Search on ENCODE]
GSM1024751 NT2-D1 None Embryo DNase [Search on ENCODE]
GSM1024795 NT2-D1 None Embryo DNase [Search on ENCODE]
GSM1024742 PrEC Epithelium Prostate DNase [Search on ENCODE]
GSM736608 SAEC Epithelium Lung DNase [Search on ENCODE]
GSM736617 SAEC Epithelium Lung DNase [Search on ENCODE]
GSM1645709 None Keratinocyte None ATAC-seq [Search on ENCODE]
GSM2035768 NHEK Keratinocyte Skin ATAC-seq [Search on ENCODE]
GSM2035756 HaCaT None None ATAC-seq [Search on ENCODE]
GSM1855976 MDA-MB-231 Epithelium Breast ATAC-seq [Search on ENCODE]
ENCSR346IHH_1 Daoy Polygonal Cerebellum DNase [Search on ENCODE]
ENCSR814KRX_1 HT29 None Colon DNase [Search on ENCODE]
ENCSR932KWJ_2 A-172 Glial Cell Brain DNase [Search on ENCODE]
ENCSR940NLN_1 PC-9 Lung Cancer Cell Lung DNase [Search on ENCODE]
ENCSR940NLN_2 PC-9 Lung Cancer Cell Lung DNase [Search on ENCODE]
ENCSR000FDI_2 HT1080 None Connective Tissue DNase [Search on ENCODE]
ENCSR373BIX_2 None Dendritic Cell None DNase [Search on ENCODE]
ENCSR754LIN_1 None Embryonic Stem Cell None DNase [Search on ENCODE]
ENCSR785BDQ_1 None glomerular visceral epithelial cell None DNase [Search on ENCODE]
GSM2243040 None Dendritic Cell None ATAC-seq [Search on ENCODE]
GSM2243038 None Dendritic Cell None ATAC-seq [Search on ENCODE]
GSM2243033 CAL-1 Plasmacytoid dendritic cell None ATAC-seq [Search on ENCODE]
GSM2544230 THP-1 Macrophage None ATAC-seq [Search on ENCODE]
GSM2544223 THP-1 Macrophage None ATAC-seq [Search on ENCODE]
GSM2544222 THP-1 Macrophage None ATAC-seq [Search on ENCODE]
GSM2544219 THP-1 Macrophage None ATAC-seq [Search on ENCODE]
GSM2544218 THP-1 Macrophage None ATAC-seq [Search on ENCODE]
GSM2083780 None Macrophage None ATAC-seq [Search on ENCODE]
GSM816635 NHEK Keratinocyte Skin DNase [Search on ENCODE]
GSM1930716 None Epithelium None DNase [Search on ENCODE]
GSM2224588 COLO 205 None Colon DNase [Search on ENCODE]
GSM2035776 HaCaT None None ATAC-seq [Search on ENCODE]
GSM2679898 None Monocyte Blood ATAC-seq [Search on ENCODE]
GSM2676284 MCF-10A Epithelium Breast DNase [Search on ENCODE]
GSM2676285 MCF-10A Epithelium Breast DNase [Search on ENCODE]
GSM2676282 MCF-10A Epithelium Breast DNase [Search on ENCODE]
GSM2676283 MCF-10A Epithelium Breast DNase [Search on ENCODE]
GSM2679897 None Monocyte Blood ATAC-seq [Search on ENCODE]
GSM2679892 None Monocyte Blood ATAC-seq [Search on ENCODE]
GSM1904731 PC-9 Lung Cancer Cell Lung ATAC-seq [Search on ENCODE]
GSM1904730 PC-9 Lung Cancer Cell Lung ATAC-seq [Search on ENCODE]
GSM2679880 None Monocyte Blood ATAC-seq [Search on ENCODE]
GSM2679887 None Monocyte Blood ATAC-seq [Search on ENCODE]
GSM2692561 PC-9 Lung Cancer Cell Lung ATAC-seq [Search on ENCODE]
GSM2692560 PC-9 Lung Cancer Cell Lung ATAC-seq [Search on ENCODE]
GSM2592781 None Macrophage Blood ATAC-seq [Search on ENCODE]
GSM2679895 None Monocyte Blood ATAC-seq [Search on ENCODE]
GSM2679896 None Monocyte Blood ATAC-seq [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.