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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 229046516-229046517 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM1034506 NHEK Keratinocyte Skin WDR5 [Search on ENCODE]
GSM802404 IMR90 Fibroblast Lung RBL1 [Search on ENCODE]
GSM1187231 NHEK Keratinocyte Skin ASCL1 [Search on ENCODE]
GSM1239069 HEK293 Epithelium Embryonic Kidney EP300 [Search on ENCODE]
GSM1006866 MCF-7 Epithelium Breast MYC [Search on ENCODE]
GSM855449 HCT-116 None Colon SP1 [Search on ENCODE]
GSM1817181 None Neural crest cell Cranial EP300 [Search on ENCODE]
GSM1817190 None Neural crest cell Cranial NR2F1 [Search on ENCODE]
GSM1817197 None Neural crest cell Cranial TFAP2A [Search on ENCODE]
GSM1817199 None Neural crest cell Cranial TFAP2A [Search on ENCODE]
GSM2112797 T47D None Breast PR [Search on ENCODE]
GSM2065886 HCT-116 Colon cancer cell Colon TCF7L1 [Search on ENCODE]
GSM2297330 HCT-116 Colon cancer cell Colon RAD21 [Search on ENCODE]
GSM2067536 786-O Epithelium Kidney CTCF [Search on ENCODE]
GSM1970165 None Fibroblast Fetal Lung SOX4 [Search on ENCODE]
GSM1970163 None Fibroblast Fetal Lung SOX4 [Search on ENCODE]
GSM2364548 SEM B Lymphocyte None AFF1 [Search on ENCODE]
GSM2544234 THP-1 Macrophage None POLR3D [Search on ENCODE]
GSM2544232 THP-1 Monocyte None POLR3D [Search on ENCODE]
GSM2543157 U2OS None None ZBTB48 [Search on ENCODE]
GSM2543155 U2OS None None ZBTB48 [Search on ENCODE]
GSM2543154 U2OS None None ZBTB48 [Search on ENCODE]
GSM2543153 HeLa None None ZBTB48 [Search on ENCODE]
GSM2543149 HeLa None None ZBTB48 [Search on ENCODE]
GSM2543148 HeLa None None ZBTB48 [Search on ENCODE]
GSM1970160 None Fibroblast Fetal Lung NEUROG2 [Search on ENCODE]
GSM1970159 None Fibroblast Fetal Lung NEUROG2 [Search on ENCODE]
GSM1970154 None Fibroblast Fetal Lung NEUROG2 [Search on ENCODE]
GSM1970153 None Fibroblast Fetal Lung NEUROG2 [Search on ENCODE]
GSM1970152 None Fibroblast Fetal Lung NEUROG2 [Search on ENCODE]
GSM1970151 None Fibroblast Fetal Lung NEUROG2 [Search on ENCODE]
GSM1970150 None Fibroblast Fetal Lung NEUROG2 [Search on ENCODE]
GSM2226138 HeLa Epithelium Cervix CDCA2 [Search on ENCODE]
GSM1617374 None None Snap-frozen tissue CNOT3 [Search on ENCODE]
GSM2398967 None Macrophage None SP140 [Search on ENCODE]
GSM1897369 MV4-11 Leukemia Cell None KMT2A [Search on ENCODE]
GSM2687534 None Monocyte Blood RUNX1 [Search on ENCODE]
GSM2687535 None Monocyte Blood TET2 [Search on ENCODE]
GSM2467009 Jurkat T Lymphocyte Blood TET2 [Search on ENCODE]
GSM2677682 None Chondrocyte Cartilage HCFC1R1 [Search on ENCODE]
GSM2274677 Jurkat T Lymphocyte Blood TET2 [Search on ENCODE]
GSM941710 BCBL1 B cell lymphoma None CTCF [Search on ENCODE]
GSM941711 BCBL1 B cell lymphoma None SMC1A [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.