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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 229046516-229046517 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM701536 None None Fetal Muscle Back DNase [Search on ENCODE]
GSM493385 None Cortex Fetal Kidney DNase [Search on ENCODE]
GSM817217 None None Fetal Muscle Back DNase [Search on ENCODE]
GSM817216 None None Fetal Muscle Arm DNase [Search on ENCODE]
GSM817214 None None Fetal Muscle Arm DNase [Search on ENCODE]
GSM1059531 None None Fetal Muscle Back DNase [Search on ENCODE]
GSM1059534 None None Fetal Muscle Trunk DNase [Search on ENCODE]
GSM1059533 None None Fetal Muscle Leg DNase [Search on ENCODE]
GSM646564 None Fibroblast Skin DNase [Search on ENCODE]
GSM878653 None None Fetal Muscle Leg DNase [Search on ENCODE]
GSM878655 None None Fetal Muscle Back DNase [Search on ENCODE]
GSM878631 None None Fetal Muscle Leg DNase [Search on ENCODE]
GSM878629 None Cortex Fetal Kidney DNase [Search on ENCODE]
GSM878632 None None Fetal Muscle Back DNase [Search on ENCODE]
GSM878625 None None Fetal Muscle Arm DNase [Search on ENCODE]
GSM878654 None None Fetal Muscle Trunk DNase [Search on ENCODE]
GSM878664 None None Fetal Muscle Trunk DNase [Search on ENCODE]
GSM1027333 None None Fetal Muscle Leg DNase [Search on ENCODE]
GSM1027349 None None Fetal Muscle Arm DNase [Search on ENCODE]
GSM817183 None None Fetal Muscle Leg DNase [Search on ENCODE]
GSM817191 None None Fetal Muscle Arm DNase [Search on ENCODE]
GSM1014512 NHDF-neo Fibroblast Skin DNase [Search on ENCODE]
GSM774224 None None Fetal Muscle Back DNase [Search on ENCODE]
GSM774223 None None Fetal Muscle Arm DNase [Search on ENCODE]
GSM774218 None None Fetal Muscle Upper Trunk DNase [Search on ENCODE]
GSM774234 None None Fetal Muscle Arm DNase [Search on ENCODE]
GSM774235 None None Fetal Muscle Back DNase [Search on ENCODE]
GSM736520 NHDF-Ad Fibroblast Skin DNase [Search on ENCODE]
GSM1513901 None Stromal Cell None DNase [Search on ENCODE]
GSM1513902 None Stromal Cell None DNase [Search on ENCODE]
GSM2257300 H7 Embryonic Stem Cell Embryo ATAC-seq [Search on ENCODE]
ENCSR782XFY_1 None None Eye DNase [Search on ENCODE]
ENCSR759UNY_1 None None Tongue DNase [Search on ENCODE]
ENCSR559WMK None None Tongue DNase [Search on ENCODE]
ENCSR000FFJ SJCRH30 Fibroblast Muscle DNase [Search on ENCODE]
GSM2186478 LNCaP Epithelium Prostate ATAC-seq [Search on ENCODE]
GSM1946441 hFOB Embryonic Stem Cell Bone DNase [Search on ENCODE]
GSM2224589 GP5d None Colon DNase [Search on ENCODE]
GSM2224591 HUTU80 None None DNase [Search on ENCODE]
GSM2845470 RUES2 Mesodermal Cell None ATAC-seq [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.