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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 1848062-1848063 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM1153766 Mutu III B Lymphocyte None EBNA3 [Search on ENCODE]
GSM1008617 H2171 Epithelium Lung MAX [Search on ENCODE]
GSM1057013 None Monocyte Blood STAT1 [Search on ENCODE]
GSM1233911 GM12878 B Lymphocyte Blood STAG1 [Search on ENCODE]
GSM1233954 GM12891 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1233975 GM12892 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1233976 GM12892 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1233979 GM18486 Lymphoblastoid Blood CTCF [Search on ENCODE]
GSM1233991 GM18486 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234098 GM19238 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234119 GM19239 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234120 GM19239 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234143 GM19240 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234179 GM2588 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234197 GM2610 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234214 GM2630 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234215 GM2630 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234237 MS1 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234238 MS1 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM935430 GM12878 B Lymphocyte Blood BHLHE40 [Search on ENCODE]
GSM935526 GM12891 Lymphoblastoid Blood RELA [Search on ENCODE]
GSM935531 GM18951 Lymphoblastoid Blood RELA [Search on ENCODE]
GSM803538 GM12878 B Lymphocyte Blood BATF [Search on ENCODE]
GSM803531 GM12878 B Lymphocyte Blood SPI1 [Search on ENCODE]
GSM803389 GM12878 B Lymphocyte Blood TCF12 [Search on ENCODE]
GSM803511 GM12878 B Lymphocyte Blood MEF2A [Search on ENCODE]
GSM803386 GM12878 B Lymphocyte Blood EBF1 [Search on ENCODE]
GSM1010893 GM12878 B Lymphocyte Blood RUNX3 [Search on ENCODE]
GSM803363 GM12878 B Lymphocyte Blood SP1 [Search on ENCODE]
GSM803398 GM12891 Lymphoblastoid Blood SPI1 [Search on ENCODE]
GSM1072711 CAL-1 Dendritic Cell None TCF4 [Search on ENCODE]
GSM1333964 GM12878 B Lymphocyte Blood EP300 [Search on ENCODE]
GSM1334005 GM12878 B Lymphocyte Blood SPI1 [Search on ENCODE]
GSM1334006 GM12878 B Lymphocyte Blood SPI1 [Search on ENCODE]
GSM1334007 GM12878 B Lymphocyte Blood SPI1 [Search on ENCODE]
GSM1334008 GM12878 B Lymphocyte Blood SPI1 [Search on ENCODE]
GSM1370272 OCI-Ly3 B Lymphocyte Bone Marrow BATF [Search on ENCODE]
GSM1370281 OCI-Ly10 B Lymphocyte Bone Marrow SPIB [Search on ENCODE]
GSM1370284 H929 B Lymphocyte Bone Marrow SPI1 [Search on ENCODE]
GSM486306 GM18951 Lymphoblastoid Blood RELA [Search on ENCODE]
GSM486323 GM12891 Lymphoblastoid Blood RELA [Search on ENCODE]
GSM1421017 None Monocyte None SPI1 [Search on ENCODE]
GSM1421019 None Monocyte None SPI1 [Search on ENCODE]
GSM1288792 None Hematopoietic Stem Cell None TRIM28 [Search on ENCODE]
GSM1468305 P493-6 B cell lymphoma None MYC [Search on ENCODE]
GSM1703922 None B Lymphocyte None SPI1 [Search on ENCODE]
GSM1958041 LCL Lymphoblastoid Blood RBPJ [Search on ENCODE]
ENCSR199WXF_1 GM12878 B Lymphocyte Blood EED [Search on ENCODE]
ENCSR199WXF_2 GM12878 B Lymphocyte Blood EED [Search on ENCODE]
ENCSR372GIN_2 GM12878 B Lymphocyte Blood CBX5 [Search on ENCODE]
ENCSR552XSN_1 GM12878 B Lymphocyte Blood MLLT1 [Search on ENCODE]
ENCSR552XSN_2 GM12878 B Lymphocyte Blood MLLT1 [Search on ENCODE]
ENCSR835XKS_2 GM12878 B Lymphocyte Blood TRIM22 [Search on ENCODE]
ENCSR874AFU_2 GM12878 B Lymphocyte Blood IKZF1 [Search on ENCODE]
ENCSR897MMC_1 GM12878 B Lymphocyte Blood JUNB [Search on ENCODE]
ENCSR897MMC_2 GM12878 B Lymphocyte Blood JUNB [Search on ENCODE]
GSM754333 GM12878 B Lymphocyte Blood MAX [Search on ENCODE]
GSM1681426 None Macrophage Blood SPI1 [Search on ENCODE]
GSM1681425 None Macrophage Blood SPI1 [Search on ENCODE]
GSM1845164 MV4;11 Leukemia Cell Blood BRD4 [Search on ENCODE]
GSM1845133 MV4;11 Leukemia Cell Blood BRD4 [Search on ENCODE]
GSM1975020 Gen2.2 Plasmacytoid dendritic cell None TCF4 [Search on ENCODE]
GSM1975018 CAL-1 Plasmacytoid dendritic cell None TCF4 [Search on ENCODE]
GSM2364555 None Monocyte Bone Marrow KMT2A [Search on ENCODE]
GSM2386723 None B Lymphocyte Tonsil CREBBP [Search on ENCODE]
GSM2405928 MV4;11 Acute myeloid leukemia None CDK9 [Search on ENCODE]
GSM2405924 MV4;11 Acute myeloid leukemia None CDK9 [Search on ENCODE]
GSM2432977 D-341 None None NEUROD1 [Search on ENCODE]
GSM2574799 GM12878 B Lymphocyte Blood USF2 [Search on ENCODE]
GSM1711862 MKL-1 Merkel cell carcinoma None MAX [Search on ENCODE]
GSM2359987 THP-1 Monocyte Blood SPI1 [Search on ENCODE]
GSM2359986 THP-1 Monocyte Blood SPI1 [Search on ENCODE]
GSM2359985 THP-1 Monocyte Blood SPI1 [Search on ENCODE]
GSM2359984 THP-1 Monocyte Blood SPI1 [Search on ENCODE]
GSM2359983 THP-1 Monocyte Blood SPI1 [Search on ENCODE]
GSM2359982 THP-1 Monocyte Blood SPI1 [Search on ENCODE]
GSM2592808 None Macrophage Blood SPI1 [Search on ENCODE]
GSM2443456 LCL B Lymphocyte None SMC1A [Search on ENCODE]
GSM2443458 LCL B Lymphocyte None MED1 [Search on ENCODE]
GSM1711858 MKL-1 Merkel cell carcinoma None MAX [Search on ENCODE]
GSM2643540 LCL Lymphoblastoid Blood BRD4 [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.