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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 1848062-1848063 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM778715 GM19171 Lymphoblastoid None DNase [Search on ENCODE]
GSM1059531 None None Fetal Muscle Back DNase [Search on ENCODE]
GSM1059534 None None Fetal Muscle Trunk DNase [Search on ENCODE]
GSM1059533 None None Fetal Muscle Leg DNase [Search on ENCODE]
GSM778696 GM19099 Lymphoblastoid Blood DNase [Search on ENCODE]
GSM778663 GM18486 Lymphoblastoid Blood DNase [Search on ENCODE]
GSM778685 GM18861 Lymphoblastoid None DNase [Search on ENCODE]
GSM646568 GM06990 B Lymphocyte Blood DNase [Search on ENCODE]
GSM909312 None Fibroblast Foreskin DNase [Search on ENCODE]
GSM1102737 None T Lymphocyte Cord blood DNase [Search on ENCODE]
GSM1027349 None None Fetal Muscle Arm DNase [Search on ENCODE]
GSM1014526 GM12865 B Lymphocyte Blood DNase [Search on ENCODE]
GSM774224 None None Fetal Muscle Back DNase [Search on ENCODE]
GSM736620 GM12878 B Lymphocyte Blood DNase [Search on ENCODE]
GSM1581831 None Myeloid Cell None DNase [Search on ENCODE]
GSM1565735 None Dendritic Cell None ATAC-seq [Search on ENCODE]
GSM1832752 None B Lymphocyte Blood ATAC-seq [Search on ENCODE]
GSM1832753 None B Lymphocyte Blood ATAC-seq [Search on ENCODE]
ENCSR489NAM_2 OCI-Ly7 B cell lymphoma Blood DNase [Search on ENCODE]
ENCSR373BIX_2 None Dendritic Cell None DNase [Search on ENCODE]
ENCSR532CRI_2 None None Limb DNase [Search on ENCODE]
GSM2243041 None Monocyte Blood ATAC-seq [Search on ENCODE]
GSM2243040 None Dendritic Cell None ATAC-seq [Search on ENCODE]
GSM2243039 None Plasmacytoid dendritic cell None ATAC-seq [Search on ENCODE]
GSM2243038 None Dendritic Cell None ATAC-seq [Search on ENCODE]
GSM2243037 None Plasmacytoid dendritic cell None ATAC-seq [Search on ENCODE]
GSM2243034 Gen2.2 Plasmacytoid dendritic cell None ATAC-seq [Search on ENCODE]
GSM2243033 CAL-1 Plasmacytoid dendritic cell None ATAC-seq [Search on ENCODE]
GSM2679882 None Monocyte Blood ATAC-seq [Search on ENCODE]
GSM2679887 None Monocyte Blood ATAC-seq [Search on ENCODE]
GSM2898863 LCL Lymphoblastoid Blood ATAC-seq [Search on ENCODE]
GSM2898861 LCL Lymphoblastoid Blood ATAC-seq [Search on ENCODE]
GSM2898869 LCL Lymphoblastoid Blood ATAC-seq [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.