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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 31921127-31921128 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM569089 Jurkat E6-1 T Lymphocyte Blood H3K27me3 [Search on ENCODE]
GSM1112786 None Mesenchymal Stem Cell Bone Marrow H3K27ac [Search on ENCODE]
GSM1112787 None Mesenchymal Stem Cell Bone Marrow H3K27ac [Search on ENCODE]
GSM1272753 iPS C1 iPSC None H3K9me3 [Search on ENCODE]
GSM1003516 None Monocyte Blood H3K4me2 [Search on ENCODE]
GSM1003536 None Monocyte Blood H3K4me3 [Search on ENCODE]
ENCSR769FOC_1 PC-9 Lung Cancer Cell Lung H3K27ac [Search on ENCODE]
ENCSR769FOC_3 PC-9 Lung Cancer Cell Lung H3K27ac [Search on ENCODE]
GSM2262956 None Monocyte Blood H3K27ac [Search on ENCODE]
GSM788370 K562 Erythroblast Bone Marrow H3K4me1 [Search on ENCODE]
GSM788371 K562 Erythroblast Bone Marrow H3K4me1 [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.