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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 149885343-149885344 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM640691 H9 Embryonic Stem Cell Embryo EOMES [Search on ENCODE]
GSM487425 K562 Erythroblast Bone Marrow JUN [Search on ENCODE]
GSM699985 MCF-7 Epithelium Breast E2F1 [Search on ENCODE]
GSM699984 MCF-7 Epithelium Breast E2F1 [Search on ENCODE]
GSM651546 None Proerythroblast Bone Marrow GATA1 [Search on ENCODE]
GSM970258 None Proerythroblast Bone Marrow GATA1 [Search on ENCODE]
GSM983104 NCI-H3122 None Lung NKX2-1 [Search on ENCODE]
GSM1218849 None Myoblast None MYOD1 [Search on ENCODE]
GSM989640 LNCaP Epithelium Prostate NKX3-1 [Search on ENCODE]
GSM1113433 Kasumi-1 Myeloblast Blood REPIN1 [Search on ENCODE]
GSM1113434 Kasumi-1 Myeloblast Blood REPIN1 [Search on ENCODE]
GSM1278240 None Proerythroblast Bone Marrow GATA1 [Search on ENCODE]
GSM1278241 None Proerythroblast Bone Marrow TAL1 [Search on ENCODE]
GSM1207889 LNCaP Epithelium Prostate E2F1 [Search on ENCODE]
GSM1207916 LNCaP Epithelium Prostate E2F1 [Search on ENCODE]
GSM1291199 None None Cord blood TAL1 [Search on ENCODE]
GSM935289 H1 Embryonic Stem Cell Embryo SIN3A [Search on ENCODE]
GSM935341 HeLa-S3 Epithelium Cervix JUN [Search on ENCODE]
GSM935365 HeLa-S3 Epithelium Cervix E2F4 [Search on ENCODE]
GSM935364 HepG2 Epithelium Liver JUN [Search on ENCODE]
GSM935340 K562 Erythroblast Bone Marrow ATF1 [Search on ENCODE]
GSM935411 K562 Erythroblast Bone Marrow JUN [Search on ENCODE]
GSM935569 K562 Erythroblast Bone Marrow JUND [Search on ENCODE]
GSM935467 K562 Erythroblast Bone Marrow JUN [Search on ENCODE]
GSM935468 K562 Erythroblast Bone Marrow JUN [Search on ENCODE]
GSM935602 K562 Erythroblast Bone Marrow JUN [Search on ENCODE]
GSM935477 MCF-7 Epithelium Breast E2F1 [Search on ENCODE]
GSM935400 MCF-10A Epithelium Breast E2F4 [Search on ENCODE]
GSM651545 None Proerythroblast Bone Marrow TAL1 [Search on ENCODE]
GSM651544 None Proerythroblast Bone Marrow TAL1 [Search on ENCODE]
GSM614004 None Proerythroblast Bone Marrow TAL1 [Search on ENCODE]
GSM803380 K562 Erythroblast Bone Marrow ATF3 [Search on ENCODE]
GSM1038697 None Erythroid Cell None TAL1 [Search on ENCODE]
GSM1246715 NCI-H441 Epithelium Lung TTF1 [Search on ENCODE]
GSM1246716 NCI-H441 Epithelium Lung TTF1 [Search on ENCODE]
GSM1273197 None Erythroid Progenitor Cell Blood LDB1 [Search on ENCODE]
GSM1331246 RD None Muscle TEAD1 [Search on ENCODE]
GSM1068136 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1068137 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1427077 None Proerythroblast Fetal Liver TAL1 [Search on ENCODE]
GSM1503215 None None Coronary artery smooth muscle TCF21 [Search on ENCODE]
GSM1656410 LNCaP-abl Epithelium Prostate E2F1 [Search on ENCODE]
GSM1782703 K562 Erythroblast Bone Marrow GATA1 [Search on ENCODE]
GSM1524325 CClp1 None None TEAD1, TEAD4 [Search on ENCODE]
GSM665907 HeLa Epithelium Cervix LIN9 [Search on ENCODE]
ENCSR021DJC_1 HEK293 Epithelium Embryonic Kidney BCL11A [Search on ENCODE]
ENCSR106FRG_2 K562 Erythroblast Bone Marrow TAL1 [Search on ENCODE]
ENCSR115SMW_2 K562 Erythroblast Bone Marrow PKNOX1 [Search on ENCODE]
ENCSR217HTK_1 HEK293 Epithelium Embryonic Kidney ATF2 [Search on ENCODE]
ENCSR217HTK_2 HEK293 Epithelium Embryonic Kidney ATF2 [Search on ENCODE]
ENCSR328SUD_1 HEK293 Epithelium Embryonic Kidney ZNF335 [Search on ENCODE]
ENCSR328SUD_2 HEK293 Epithelium Embryonic Kidney ZNF335 [Search on ENCODE]
ENCSR961PPA_2 GM12878 B Lymphocyte Blood ATF2 [Search on ENCODE]
GSM1816083 F5 Erythroid Progenitor Cell Fetal Liver TAL1 [Search on ENCODE]
GSM2058892 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1700639 NCI-H889 None None ASCL1 [Search on ENCODE]
GSM2305255 LNCaP None LNCaP cells MYC [Search on ENCODE]
GSM2305254 LNCaP None LNCaP cells MYC [Search on ENCODE]
GSM2305253 LNCaP None LNCaP cells MYC [Search on ENCODE]
GSM2305252 LNCaP None LNCaP cells MYC [Search on ENCODE]
GSM2305251 LNCaP None LNCaP cells MYC [Search on ENCODE]
GSM2104436 HeLa Epithelium Cervix MBD3 [Search on ENCODE]
GSM2171836 MCF-7 asynchonous cells Breast GRHL2 [Search on ENCODE]
GSM2171834 MCF-7 asynchonous cells Breast GRHL2 [Search on ENCODE]
GSM2386721 None B Lymphocyte Tonsil CREBBP [Search on ENCODE]
GSM2452103 None Hematopoietic stem and progenitor cell Blood TAL1 [Search on ENCODE]
GSM2452102 None Hematopoietic stem and progenitor cell Blood GATA1 [Search on ENCODE]
GSM2224584 COLO-320 Colorectal cancer cell line None TFAP4 [Search on ENCODE]
GSM2224583 SNU175 Colorectal cancer cell line None TFAP4 [Search on ENCODE]
GSM2122802 LNCaP Epithelium Prostate GRHL2 [Search on ENCODE]
GSM2132552 MM1.S Multiple myeloma cell None E2F1 [Search on ENCODE]
GSM2466607 293T None None ZNF585A [Search on ENCODE]
GSM2132551 MM1.S B Lymphocyte Blood TFDP1 [Search on ENCODE]
GSM2817659 H9 Embryonic Stem Cell Embryo GATA3 [Search on ENCODE]
GSM2359982 THP-1 Monocyte Blood SPI1 [Search on ENCODE]
GSM2877107 K562 Erythroblast Bone Marrow TAL1 [Search on ENCODE]
GSM2877108 K562 Erythroblast Bone Marrow TAL1 [Search on ENCODE]
GSM2877124 K562 Erythroblast Bone Marrow TAL1 [Search on ENCODE]
GSM2970415 MCF-7 Epithelium Breast GRHL2 [Search on ENCODE]
GSM2877116 K562 Erythroblast Bone Marrow TAL1 [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.