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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 66351755-66351756 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM530665 IMR90 Fibroblast Lung DNase [Search on ENCODE]
GSM701516 None T Lymphocyte Blood DNase [Search on ENCODE]
GSM665820 None Natural Killer Cell Blood DNase [Search on ENCODE]
GSM1036259 None T Lymphocyte Blood DNase [Search on ENCODE]
GSM1036373 None T Lymphocyte Blood DNase [Search on ENCODE]
GSM1036372 None Natural Killer Cell Blood DNase [Search on ENCODE]
GSM1024610 None Melanocyte Foreskin DNase [Search on ENCODE]
GSM1059530 None T Lymphocyte Blood DNase [Search on ENCODE]
GSM646564 None Fibroblast Skin DNase [Search on ENCODE]
GSM646565 None Epithelium None DNase [Search on ENCODE]
GSM646560 None Epithelium Amnion DNase [Search on ENCODE]
GSM878645 None None Fetal Skin Biceps Left DNase [Search on ENCODE]
GSM878644 None None Fetal Skin Biceps Left DNase [Search on ENCODE]
GSM878636 None None Fetal Skin Abdomen DNase [Search on ENCODE]
GSM878648 None None Fetal Skin Quadriceps Left DNase [Search on ENCODE]
GSM878649 None None Fetal Skin Quadriceps Left DNase [Search on ENCODE]
GSM878635 None None Fetal Skin Abdomen DNase [Search on ENCODE]
GSM817170 None Fibroblast Foreskin DNase [Search on ENCODE]
GSM1014510 None Fibroblast Connective Tissue DNase [Search on ENCODE]
GSM1014512 NHDF-neo Fibroblast Skin DNase [Search on ENCODE]
GSM1014518 None Embryonic Fibroblast Heart DNase [Search on ENCODE]
GSM1014537 None T Lymphocyte Blood DNase [Search on ENCODE]
GSM1014526 GM12865 B Lymphocyte Blood DNase [Search on ENCODE]
GSM1014527 AG10803 Fibroblast Skin DNase [Search on ENCODE]
GSM1014524 LHCN-M2 Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM1014515 None Myocyte Heart DNase [Search on ENCODE]
GSM1014530 None Fibroblast Heart DNase [Search on ENCODE]
GSM1014531 None Embryonic Fibroblast Foreskin DNase [Search on ENCODE]
GSM1014520 None Epithelium None DNase [Search on ENCODE]
GSM1014534 HGF Fibroblast Gingiva DNase [Search on ENCODE]
GSM1058790 None T Lymphocyte Blood DNase [Search on ENCODE]
GSM723024 IMR90 Fibroblast Lung DNase [Search on ENCODE]
GSM774241 None Fibroblast Foreskin DNase [Search on ENCODE]
GSM774240 None Fibroblast Foreskin DNase [Search on ENCODE]
GSM849031 None Fibroblast Pulmonary Artery DNase [Search on ENCODE]
GSM1220607 None None Fetal Skin Abdomen DNase [Search on ENCODE]
GSM1220610 None None Fetal Skin Quadriceps Right DNase [Search on ENCODE]
GSM1338307 None Fibroblast None DNase [Search on ENCODE]
GSM1338308 None Fibroblast None DNase [Search on ENCODE]
GSM1338309 None Fibroblast None DNase [Search on ENCODE]
GSM1338310 None Fibroblast None DNase [Search on ENCODE]
GSM736551 AG09309 Fibroblast Skin DNase [Search on ENCODE]
GSM736616 AG09309 Fibroblast Skin DNase [Search on ENCODE]
GSM736606 None Epithelium Amnion DNase [Search on ENCODE]
GSM736631 None Epithelium Amnion DNase [Search on ENCODE]
GSM736540 None Fibroblast Heart DNase [Search on ENCODE]
GSM736568 None Fibroblast Heart DNase [Search on ENCODE]
GSM736494 None Embryonic Fibroblast Heart DNase [Search on ENCODE]
GSM736601 None Embryonic Fibroblast Heart DNase [Search on ENCODE]
GSM736516 None Myocyte Heart DNase [Search on ENCODE]
GSM736569 None Epithelium None DNase [Search on ENCODE]
GSM736597 None Epithelium None DNase [Search on ENCODE]
GSM736572 None Embryonic Fibroblast Foreskin DNase [Search on ENCODE]
GSM736602 None Embryonic Fibroblast Foreskin DNase [Search on ENCODE]
GSM736605 None Embryonic Fibroblast Foreskin DNase [Search on ENCODE]
GSM736542 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM736550 None Epithelium None DNase [Search on ENCODE]
GSM736555 None Fibroblast Pulmonary Artery DNase [Search on ENCODE]
GSM736614 None Fibroblast Pulmonary Artery DNase [Search on ENCODE]
GSM736528 None Fibroblast Periodontal Ligament DNase [Search on ENCODE]
GSM736632 None Fibroblast Periodontal Ligament DNase [Search on ENCODE]
GSM736491 None Fibroblast Connective Tissue DNase [Search on ENCODE]
GSM736534 None Fibroblast Connective Tissue DNase [Search on ENCODE]
GSM736520 NHDF-Ad Fibroblast Skin DNase [Search on ENCODE]
GSM736567 NHDF-Ad Fibroblast Skin DNase [Search on ENCODE]
GSM736498 NHDF-neo Fibroblast Skin DNase [Search on ENCODE]
GSM736546 NHDF-neo Fibroblast Skin DNase [Search on ENCODE]
GSM1621354 GM12878 B Lymphocyte Blood ATAC-seq [Search on ENCODE]
GSM1565734 None Dendritic Cell None ATAC-seq [Search on ENCODE]
GSM1818001 UCH2 None Bone ATAC-seq [Search on ENCODE]
GSM1818002 UCH2 None Bone ATAC-seq [Search on ENCODE]
GSM2048321 None Th17 Tonsil ATAC-seq [Search on ENCODE]
ENCSR405TXU_1 None Adipocyte None DNase [Search on ENCODE]
ENCSR426IEA_1 KBM-7 Myeloblast Blood DNase [Search on ENCODE]
ENCSR217TAW_1 None Fibroblast None DNase [Search on ENCODE]
ENCSR217TAW_2 None Fibroblast None DNase [Search on ENCODE]
ENCSR000FJH_1 NCI-H460 None None DNase [Search on ENCODE]
ENCSR000FJH_2 NCI-H460 None None DNase [Search on ENCODE]
ENCSR000FJH_3 NCI-H460 None None DNase [Search on ENCODE]
GSM2108586 GM12878 FACS sorted S group None ATAC-seq [Search on ENCODE]
GSM2098983 HFF Fibroblast Foreskin ATAC-seq [Search on ENCODE]
GSM2098982 HFF Fibroblast Foreskin ATAC-seq [Search on ENCODE]
GSM2241147 T47D Epithelium Mammary Gland ATAC-seq [Search on ENCODE]
GSM2306501 None Th17 None ATAC-seq [Search on ENCODE]
GSM2306500 None Th17 None ATAC-seq [Search on ENCODE]
GSM2285650 None T Lymphocyte None ATAC-seq [Search on ENCODE]
GSM2285637 None T Lymphocyte None ATAC-seq [Search on ENCODE]
GSM2365853 None Lymphocyte Blood ATAC-seq [Search on ENCODE]
GSM2365849 None Lymphocyte Blood ATAC-seq [Search on ENCODE]
GSM2365847 None Lymphocyte Blood ATAC-seq [Search on ENCODE]
GSM2977486 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2679878 None Monocyte Blood ATAC-seq [Search on ENCODE]
GSM2679874 None Monocyte Blood ATAC-seq [Search on ENCODE]
GSM2679872 None Monocyte Blood ATAC-seq [Search on ENCODE]
GSM2430669 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2679880 None Monocyte Blood ATAC-seq [Search on ENCODE]
GSM2430672 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2898863 LCL Lymphoblastoid Blood ATAC-seq [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.