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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 9556103-9556104 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM759660 LNCaP Epithelium Prostate AR [Search on ENCODE]
GSM759659 LNCaP Epithelium Prostate AR [Search on ENCODE]
GSM759670 LNCaP Epithelium Prostate NR3C1 [Search on ENCODE]
GSM759669 LNCaP Epithelium Prostate NR3C1 [Search on ENCODE]
GSM696844 LNCaP Epithelium Prostate POLR2A [Search on ENCODE]
GSM696842 VCaP Epithelium Prostate AR [Search on ENCODE]
GSM820430 HeLa Epithelium Cervix TERC [Search on ENCODE]
GSM820431 HeLa Epithelium Cervix TERC [Search on ENCODE]
GSM820438 HeLa Epithelium Cervix TERC [Search on ENCODE]
GSM651558 None CD36 Cell None SMARCA4 [Search on ENCODE]
GSM980664 LNCaP Epithelium Prostate NR3C1 [Search on ENCODE]
GSM980665 LNCaP Epithelium Prostate NR3C1 [Search on ENCODE]
GSM980655 LNCaP Epithelium Prostate NR3C1 [Search on ENCODE]
GSM1176699 HEK293 Epithelium Embryonic Kidney NR3C1 [Search on ENCODE]
GSM1176701 HEK293 Epithelium Embryonic Kidney NR3C1 [Search on ENCODE]
GSM1006866 MCF-7 Epithelium Breast MYC [Search on ENCODE]
GSM803371 A549 Epithelium Lung NR3C1 [Search on ENCODE]
GSM803358 A549 Epithelium Lung NR3C1 [Search on ENCODE]
GSM1164141 DU145 Epithelium Prostate AR [Search on ENCODE]
GSM1164151 DU145 Epithelium Prostate AR [Search on ENCODE]
GSM1308229 HEK293 Epithelium Embryonic Kidney AR [Search on ENCODE]
GSM1308230 HEK293 Epithelium Embryonic Kidney AR [Search on ENCODE]
GSM1308232 HEK293 Epithelium Embryonic Kidney AR [Search on ENCODE]
GSM1308233 HEK293 Epithelium Embryonic Kidney AR [Search on ENCODE]
GSM1308236 PC-3 Epithelium Prostate AR [Search on ENCODE]
GSM1308237 PC-3 Epithelium Prostate AR [Search on ENCODE]
GSM1308240 PC-3 Epithelium Prostate AR [Search on ENCODE]
GSM1308241 PC-3 Epithelium Prostate AR [Search on ENCODE]
GSM1340255 C4-2 Epithelium None POLR2A [Search on ENCODE]
GSM1716765 LHSAR Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1716766 LHSAR Epithelium Prostate HOXB13 [Search on ENCODE]
GSM1716767 LHSAR Epithelium Prostate HOXB13 [Search on ENCODE]
GSM1716768 LHSAR Epithelium Prostate HOXB13 [Search on ENCODE]
GSM1716769 LHSAR Epithelium Prostate AR [Search on ENCODE]
GSM1716770 LHSAR Epithelium Prostate AR [Search on ENCODE]
GSM1607525 U2OS None Bone NR3C1 [Search on ENCODE]
GSM1607526 U2OS None Bone NR3C1 [Search on ENCODE]
GSM1607528 U2OS None Bone NR3C1 [Search on ENCODE]
GSM1586661 C4-2 None Prostate AR [Search on ENCODE]
GSM2305255 LNCaP None LNCaP cells MYC [Search on ENCODE]
GSM2305254 LNCaP None LNCaP cells MYC [Search on ENCODE]
GSM2305253 LNCaP None LNCaP cells MYC [Search on ENCODE]
GSM2305252 LNCaP None LNCaP cells MYC [Search on ENCODE]
GSM2305251 LNCaP None LNCaP cells MYC [Search on ENCODE]
GSM2095208 A549 Epithelium Lung NR3C1 [Search on ENCODE]
GSM2735382 MCF-10A Epithelium Breast NR3C1 [Search on ENCODE]
GSM2519950 None None Muscle KLF15 [Search on ENCODE]
GSM2519951 None None Muscle KLF15 [Search on ENCODE]
GSM2735380 MCF-10A Epithelium Breast NR3C1 [Search on ENCODE]
GSM2735378 MCF-10A Epithelium Breast NR3C1 [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.