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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 228783489-228783490 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM614632 HepG2 Epithelium Liver HNF4A [Search on ENCODE]
GSM469864 HepG2 Epithelium Liver HNF4A [Search on ENCODE]
GSM469863 HepG2 Epithelium Liver HNF4A [Search on ENCODE]
GSM594603 MCF-7 Epithelium Breast ESR1 [Search on ENCODE]
GSM970258 None Proerythroblast Bone Marrow GATA1 [Search on ENCODE]
GSM575229 Caco-2 Epithelium Colon HNF4A [Search on ENCODE]
GSM575228 Caco-2 Epithelium Colon HNF4A [Search on ENCODE]
GSM1208668 LoVo None Colon RAD21 [Search on ENCODE]
GSM1208738 LoVo None Colon ETS2 [Search on ENCODE]
GSM1208632 LoVo None Colon HNF4A [Search on ENCODE]
GSM1208763 LoVo None Colon JUND [Search on ENCODE]
GSM1208678 LoVo None Colon SMC1A [Search on ENCODE]
GSM1208679 LoVo None Colon SMC3 [Search on ENCODE]
GSM1208606 LoVo None Colon E2F2 [Search on ENCODE]
GSM1239454 LoVo None Colon ETV5 [Search on ENCODE]
GSM1239460 LoVo None Colon HOXA4 [Search on ENCODE]
GSM1239538 LoVo None Colon RAD21 [Search on ENCODE]
GSM1240815 GP5d None Colon HNF4A [Search on ENCODE]
GSM1240829 GP5d None Colon HNF4A [Search on ENCODE]
GSM1242266 LoVo None Colon HNF4A [Search on ENCODE]
GSM1278240 None Proerythroblast Bone Marrow GATA1 [Search on ENCODE]
GSM935619 HepG2 Epithelium Liver HNF4A [Search on ENCODE]
GSM803361 A549 Epithelium Lung POLR2A [Search on ENCODE]
GSM1010803 H1 Embryonic Stem Cell Embryo POLR2A [Search on ENCODE]
GSM803507 HepG2 Epithelium Liver SP1 [Search on ENCODE]
GSM803404 HepG2 Epithelium Liver HNF4G [Search on ENCODE]
GSM1010809 HepG2 Epithelium Liver ZEB1 [Search on ENCODE]
GSM1250893 YCC3 Epithelium None GATA6 [Search on ENCODE]
GSM1477597 SW480 None Colon PROX1 [Search on ENCODE]
GSM791413 LS180 Epithelium Colon CDX2 [Search on ENCODE]
GSM791414 LS180 Epithelium Colon CDX2 [Search on ENCODE]
GSM1535709 HCT-116 None Colon HNF4A [Search on ENCODE]
GSM1861922 HepG2 Epithelium Liver RAD21 [Search on ENCODE]
ENCSR054FKH_2 HepG2 Epithelium Liver RAD21 [Search on ENCODE]
ENCSR230ZWH_1 None None Liver RAD21 [Search on ENCODE]
ENCSR230ZWH_2 None None Liver RAD21 [Search on ENCODE]
ENCSR297GII_1 None None Liver HNF4G [Search on ENCODE]
ENCSR297GII_2 None None Liver HNF4G [Search on ENCODE]
ENCSR382MOM_1 None None Liver YY1 [Search on ENCODE]
ENCSR917QNE_1 None None Liver RAD21 [Search on ENCODE]
ENCSR917QNE_2 None None Liver RAD21 [Search on ENCODE]
GSM2026864 HEK293 Epithelium Embryonic Kidney ZNF341 [Search on ENCODE]
GSM2042908 HT29 colorectal adenocarcinoma None POLR2A [Search on ENCODE]
GSM2042906 HT29 colorectal adenocarcinoma None POLR2A [Search on ENCODE]
GSM2042905 HT29 colorectal adenocarcinoma None POLR2A [Search on ENCODE]
GSM2042904 HT29 colorectal adenocarcinoma None POLR2A [Search on ENCODE]
GSM2042901 HT29 colorectal adenocarcinoma None POLR2A [Search on ENCODE]
GSM2042900 HT29 colorectal adenocarcinoma None POLR2A [Search on ENCODE]
GSM2042899 HT29 colorectal adenocarcinoma None POLR2A [Search on ENCODE]
GSM2042852 HT29 colorectal adenocarcinoma None NR1H3 [Search on ENCODE]
GSM2042846 HT29 colorectal adenocarcinoma None NR1H3 [Search on ENCODE]
GSM2333439 None Beta cell None PAX6 [Search on ENCODE]
GSM803432 HepG2 Epithelium Liver FOXA1 [Search on ENCODE]
GSM803460 HepG2 Epithelium Liver HNF4A [Search on ENCODE]
GSM2277158 22RV1 Epithelium Prostate AR [Search on ENCODE]
GSM2277157 LNCaP Epithelium Prostate HNF4G [Search on ENCODE]
GSM889410 LS174T Epithelium Colon POLR2A [Search on ENCODE]
GSM889411 LS174T Epithelium Colon POLR2A [Search on ENCODE]
GSM889412 LS174T Epithelium Colon POLR2A [Search on ENCODE]
GSM889414 LS174T Epithelium Colon POLR2A [Search on ENCODE]
GSM957611 RPMI-8402 T cell leukemia Blood TCF12 [Search on ENCODE]
GSM957612 RPMI-8402 T cell leukemia Blood TAL1 [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.