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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 228783489-228783490 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM727601 H9 Embryonic Stem Cell Embryo H3K27me3 [Search on ENCODE]
GSM915331 None None Sigmoid Colon H3K27ac [Search on ENCODE]
GSM910559 None None Sigmoid Colon H3K27ac [Search on ENCODE]
GSM669972 None Hepatocyte Liver H3K4me1 [Search on ENCODE]
GSM646363 HepG2 Epithelium Liver H3K4me2 [Search on ENCODE]
GSM621654 None Hepatocyte Liver H3K4me1 [Search on ENCODE]
GSM575223 Caco-2 Epithelium Colon H3K4me2 [Search on ENCODE]
GSM537706 None Hepatocyte Liver H3K4me1 [Search on ENCODE]
GSM1058765 None Epithelium Fetal Large Intestine H3K27ac [Search on ENCODE]
GSM1058766 None Epithelium Fetal Small Intestine H3K27ac [Search on ENCODE]
GSM1112801 None None Rectal Mucosa H3K27ac [Search on ENCODE]
GSM1112795 None None Rectal Mucosa H3K27ac [Search on ENCODE]
GSM621671 None Epithelium Colon H3K4me3 [Search on ENCODE]
GSM883687 None None Colon Crypt H3K27ac [Search on ENCODE]
GSM883685 None None Colon Crypt H3K27ac [Search on ENCODE]
GSM1160204 None Epithelium Fetal Placenta H3K9me3 [Search on ENCODE]
GSM1127172 None Epithelium Small Intestine H3K27ac [Search on ENCODE]
GSM1273670 None Embryonic Stem Cell Embryo H3K27ac [Search on ENCODE]
GSM1280521 None Epithelium Mammary Gland H3K27me3 [Search on ENCODE]
GSM1003496 A549 Epithelium Lung H3K4me2 [Search on ENCODE]
GSM1003542 A549 Epithelium Lung H3K4me3 [Search on ENCODE]
GSM1003561 A549 Epithelium Lung H3K4me3 [Search on ENCODE]
GSM1010914 AG04450 Fibroblast Fetal Lung H3K9me3 [Search on ENCODE]
GSM733693 HepG2 Epithelium Liver H3K4me2 [Search on ENCODE]
GSM1252290 None None Stomach H3K27ac [Search on ENCODE]
GSM1484307 None Melanoma Cell None H3K27me3 [Search on ENCODE]
GSM1528889 H9 Embryonic Stem Cell Embryo H3K9me3 [Search on ENCODE]
GSM1820938 TC-797 None None H3K27ac [Search on ENCODE]
GSM1820958 TC-797 None None H3K27ac [Search on ENCODE]
GSM1670897 HepG2 Epithelium Liver H3K27ac [Search on ENCODE]
GSM1819881 K562 Erythroblast Bone Marrow H3K9me3 [Search on ENCODE]
GSM1819882 K562 Erythroblast Bone Marrow H3K9me3 [Search on ENCODE]
GSM1819883 K562 Erythroblast Bone Marrow H3K9me3 [Search on ENCODE]
GSM1819886 K562 Erythroblast Bone Marrow H3K9me3 [Search on ENCODE]
GSM1819889 K562 Erythroblast Bone Marrow H3K9me3 [Search on ENCODE]
GSM1819890 K562 Erythroblast Bone Marrow H3K9me3 [Search on ENCODE]
GSM1819892 K562 Erythroblast Bone Marrow H3K9me3 [Search on ENCODE]
GSM1819893 K562 Erythroblast Bone Marrow H3K9me3 [Search on ENCODE]
GSM1890738 COLO 205 None Colon H3K27ac [Search on ENCODE]
GSM1890754 LS180 Epithelium Colon H3K27ac [Search on ENCODE]
ENCSR016PSC_1 A549 Epithelium Lung H3K4me2 [Search on ENCODE]
ENCSR016PSC_2 A549 Epithelium Lung H3K4me2 [Search on ENCODE]
ENCSR016PSC_3 A549 Epithelium Lung H3K4me2 [Search on ENCODE]
ENCSR102XUM_1 A549 Epithelium Lung H3K27ac [Search on ENCODE]
ENCSR124YCC_1 A549 Epithelium Lung H3K4me2 [Search on ENCODE]
ENCSR124YCC_2 A549 Epithelium Lung H3K4me2 [Search on ENCODE]
ENCSR124YCC_3 A549 Epithelium Lung H3K4me2 [Search on ENCODE]
ENCSR215DID_1 A549 Epithelium Lung H3K4me2 [Search on ENCODE]
ENCSR215DID_2 A549 Epithelium Lung H3K4me2 [Search on ENCODE]
ENCSR215DID_3 A549 Epithelium Lung H3K4me2 [Search on ENCODE]
ENCSR220XCD_2 None Hepatocyte None H3K4me2 [Search on ENCODE]
ENCSR410BCN_1 A549 Epithelium Lung H3K4me2 [Search on ENCODE]
ENCSR410BCN_2 A549 Epithelium Lung H3K4me2 [Search on ENCODE]
ENCSR410BCN_3 A549 Epithelium Lung H3K4me2 [Search on ENCODE]
ENCSR428DFL_1 A549 Epithelium Lung H3K4me2 [Search on ENCODE]
ENCSR428DFL_2 A549 Epithelium Lung H3K4me2 [Search on ENCODE]
ENCSR428DFL_3 A549 Epithelium Lung H3K4me2 [Search on ENCODE]
ENCSR507UDH_1 None Hepatocyte None H3K27ac [Search on ENCODE]
ENCSR520BIM_2 None None Pancreas H3K27ac [Search on ENCODE]
ENCSR537FVU_1 A549 Epithelium Lung H3K4me1 [Search on ENCODE]
ENCSR555EAA_1 A549 Epithelium Lung H3K4me2 [Search on ENCODE]
ENCSR555EAA_3 A549 Epithelium Lung H3K4me2 [Search on ENCODE]
ENCSR596PFU_1 None None Pancreas H3K27ac [Search on ENCODE]
ENCSR692JHM_1 A549 Epithelium Lung H3K4me2 [Search on ENCODE]
ENCSR692JHM_2 A549 Epithelium Lung H3K4me2 [Search on ENCODE]
ENCSR766NHB_1 A549 Epithelium Lung H3K4me2 [Search on ENCODE]
ENCSR766NHB_2 A549 Epithelium Lung H3K4me2 [Search on ENCODE]
ENCSR766NHB_3 A549 Epithelium Lung H3K4me2 [Search on ENCODE]
ENCSR774KCU_1 A549 Epithelium Lung H3K4me2 [Search on ENCODE]
ENCSR774KCU_2 A549 Epithelium Lung H3K4me2 [Search on ENCODE]
ENCSR834LCU_1 A549 Epithelium Lung H3K4me2 [Search on ENCODE]
ENCSR834LCU_2 A549 Epithelium Lung H3K4me2 [Search on ENCODE]
ENCSR905REY_1 A549 Epithelium Lung H3K4me2 [Search on ENCODE]
ENCSR905REY_2 A549 Epithelium Lung H3K4me2 [Search on ENCODE]
ENCSR905REY_3 A549 Epithelium Lung H3K4me2 [Search on ENCODE]
ENCSR918VQU_2 A549 Epithelium Lung H3K4me2 [Search on ENCODE]
GSM2037494 None None Gastric Primary Sample H3K27ac [Search on ENCODE]
GSM1975218 None None Gastric Primary Sample H3K27ac [Search on ENCODE]
GSM1975113 RERF-GC-1B None Gastric Cancer Line H3K27ac [Search on ENCODE]
GSM1969663 None None Gastric Primary Sample H3K27ac [Search on ENCODE]
GSM1969558 RERF-GC-1B None Gastric Cancer Line H3K27ac [Search on ENCODE]
GSM2483418 MCF-7 Epithelium Breast H3K27ac [Search on ENCODE]
GSM2058056 None None primary colorectal cancer tumor H3K27ac [Search on ENCODE]
GSM2058031 V1058 Colorectal cancer cell line None H3K27ac [Search on ENCODE]
GSM2058029 V1024 Colorectal cancer cell line None H3K27ac [Search on ENCODE]
GSM2058023 None None Colon Crypt H3K27ac [Search on ENCODE]
GSM2360940 Huh7 Epithelium Liver H3K27ac [Search on ENCODE]
GSM2360939 Huh7 Epithelium Liver H3K27ac [Search on ENCODE]
GSM1574291 CFPAC-1 None None H3K4me1 [Search on ENCODE]
GSM1574290 CFPAC-1 None None H3K4me1 [Search on ENCODE]
GSM1574288 CFPAC-1 None None H3K4me1 [Search on ENCODE]
GSM1574243 Capan-2 None Pancreatic ductal H3K4me1 [Search on ENCODE]
GSM1892655 None None FFPE H3K4me2 [Search on ENCODE]
GSM1892634 None None Snap-frozen tissue H3K4me2 [Search on ENCODE]
GSM1892621 None None FFPE H3K4me2 [Search on ENCODE]
GSM2175560 HCT-116 Human colorectal tumor None H3K4me1 [Search on ENCODE]
GSM1975181 FU97 None Gastric Cancer Line H3K4me3 [Search on ENCODE]
GSM1969626 FU97 None Gastric Cancer Line H3K4me3 [Search on ENCODE]
GSM1541018 RWPE1 Epithelium Prostate H3K4me3 [Search on ENCODE]
GSM1617370 None None Snap-frozen tissue H3K4me2 [Search on ENCODE]
GSM1617360 None None Snap-frozen tissue H3K4me2 [Search on ENCODE]
GSM2279073 Jurkat T Lymphocyte Blood H3K27me3 [Search on ENCODE]
GSM2279072 Jurkat T Lymphocyte Blood H3K27me3 [Search on ENCODE]
GSM2058092 None None primary colorectal cancer tumor H3K4me1 [Search on ENCODE]
GSM2058076 V432 None None H3K4me1 [Search on ENCODE]
GSM2058061 None None Colon Crypt H3K4me1 [Search on ENCODE]
GSM2360949 Huh7 Epithelium Liver H3K9ac [Search on ENCODE]
GSM2360948 Huh7 None None H3K9ac [Search on ENCODE]
GSM2360944 Huh7 Epithelium Liver H3K36ac [Search on ENCODE]
GSM2360942 Huh7 None None H3K36ac [Search on ENCODE]
GSM2640403 HT-3 Patient None H3K27ac [Search on ENCODE]
GSM2532773 Caco-2 Epithelium Colon H3K27ac [Search on ENCODE]
GSM2746535 SW480 None Colon H3K4me1 [Search on ENCODE]
GSM2648927 H9 Embryonic Stem Cell Embryo H3K4me1 [Search on ENCODE]
GSM2644048 D1 ORL UVA Hepatocyte None H3K4me1 [Search on ENCODE]
GSM2712766 HCT-116 None HCT116 H3K4me1 [Search on ENCODE]
GSM2712765 HCT-116 None HCT116 H3K4me1 [Search on ENCODE]
GSM2711386 HCT-116 None HCT116 H3K4me1 [Search on ENCODE]
GSM2359488 A549 Epithelium Lung H3K27ac [Search on ENCODE]
GSM2711385 HCT-116 None HCT116 H3K4me1 [Search on ENCODE]
GSM2644050 D1 ORL UVA Hepatocyte None H3K27ac [Search on ENCODE]
GSM2644051 None Hepatocyte None H3K4me1 [Search on ENCODE]
GSM2644053 None Hepatocyte None H3K27ac [Search on ENCODE]
GSM2644054 None Hepatocyte None H3K4me1 [Search on ENCODE]
GSM2644056 None Hepatocyte None H3K27ac [Search on ENCODE]
GSM2946722 Huh7 cancer cells Liver H3K4me3 [Search on ENCODE]
GSM2359494 A549 Epithelium Lung H3K27ac [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.