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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 228783489-228783490 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM701538 None None Fetal Stomach DNase [Search on ENCODE]
GSM701531 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM701530 None Epithelium Fetal Small Intestine DNase [Search on ENCODE]
GSM701528 None None Fetal Stomach DNase [Search on ENCODE]
GSM701521 None None Fetal Stomach DNase [Search on ENCODE]
GSM701500 None B Lymphocyte Blood DNase [Search on ENCODE]
GSM701498 None None Fetal Stomach DNase [Search on ENCODE]
GSM701496 None Epithelium Fetal Small Intestine DNase [Search on ENCODE]
GSM701495 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM701490 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM665835 None Epithelium Small Intestine DNase [Search on ENCODE]
GSM665826 None Epithelium Large Intestine DNase [Search on ENCODE]
GSM665825 None Epithelium Small Intestine DNase [Search on ENCODE]
GSM665818 None Epithelium Large Intestine DNase [Search on ENCODE]
GSM1024606 None None Fetal Stomach DNase [Search on ENCODE]
GSM1059532 None None Fetal Stomach DNase [Search on ENCODE]
GSM646559 HepG2 Epithelium Liver DNase [Search on ENCODE]
GSM878665 None None Fetal Stomach DNase [Search on ENCODE]
GSM1027318 None None Fetal Stomach DNase [Search on ENCODE]
GSM1027326 None None Pancreas DNase [Search on ENCODE]
GSM1027320 None None Stomach DNase [Search on ENCODE]
GSM1027327 None Epithelium Fetal Small Intestine DNase [Search on ENCODE]
GSM817173 None None Fetal Stomach DNase [Search on ENCODE]
GSM817188 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM817162 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM817187 None Epithelium Fetal Small Intestine DNase [Search on ENCODE]
GSM817161 None Epithelium Fetal Small Intestine DNase [Search on ENCODE]
GSM774220 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM774225 None Epithelium Fetal Small Intestine DNase [Search on ENCODE]
GSM774229 None Epithelium Fetal Small Intestine DNase [Search on ENCODE]
GSM774228 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM774233 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM774210 None Epithelium Fetal Small Intestine DNase [Search on ENCODE]
GSM774216 None Epithelium Fetal Small Intestine DNase [Search on ENCODE]
GSM774217 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM774213 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM774214 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM774205 None Epithelium Fetal Small Intestine DNase [Search on ENCODE]
GSM1102739 None Epithelium Small Intestine DNase [Search on ENCODE]
ENCSR814KRX_2 HT29 None Colon DNase [Search on ENCODE]
ENCSR217SET_1 SW480 None Colon DNase [Search on ENCODE]
ENCSR228IKB_1 None None Pancreas DNase [Search on ENCODE]
ENCSR228IKB_2 None None Pancreas DNase [Search on ENCODE]
ENCSR522WLH_1 None None Pancreas DNase [Search on ENCODE]
ENCSR790FIS_1 None None Colon DNase [Search on ENCODE]
ENCSR848XIY_1 None None Adrenal Gland DNase [Search on ENCODE]
GSM2224597 LoVo None Colon DNase [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.