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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 168032371-168032372 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM665827 None Epithelium Lung DNase [Search on ENCODE]
GSM1059533 None None Fetal Muscle Leg DNase [Search on ENCODE]
GSM816656 GM12891 Lymphoblastoid Blood DNase [Search on ENCODE]
GSM817175 None Epithelium Fetal Lung Left DNase [Search on ENCODE]
GSM817168 None Epithelium Fetal Lung Left DNase [Search on ENCODE]
GSM817186 None Epithelium Fetal Lung Right DNase [Search on ENCODE]
GSM817185 None Epithelium Fetal Lung Left DNase [Search on ENCODE]
GSM774231 None Epithelium Fetal Lung Right DNase [Search on ENCODE]
GSM1565734 None Dendritic Cell None ATAC-seq [Search on ENCODE]
GSM1565735 None Dendritic Cell None ATAC-seq [Search on ENCODE]
GSM2243041 None Monocyte Blood ATAC-seq [Search on ENCODE]
GSM2243040 None Dendritic Cell None ATAC-seq [Search on ENCODE]
GSM2243039 None Plasmacytoid dendritic cell None ATAC-seq [Search on ENCODE]
GSM2243038 None Dendritic Cell None ATAC-seq [Search on ENCODE]
GSM2243037 None Plasmacytoid dendritic cell None ATAC-seq [Search on ENCODE]
GSM2243034 Gen2.2 Plasmacytoid dendritic cell None ATAC-seq [Search on ENCODE]
GSM2243033 CAL-1 Plasmacytoid dendritic cell None ATAC-seq [Search on ENCODE]
GSM2544219 THP-1 Macrophage None ATAC-seq [Search on ENCODE]
GSM489280 GM12891 Lymphoblastoid Blood DNase [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.