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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 40380189-40380190 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM730704 None Endothelial Cell Umbilical Vein FOS [Search on ENCODE]
GSM525269 T98G None Brain CREBBP [Search on ENCODE]
GSM1208763 LoVo None Colon JUND [Search on ENCODE]
GSM935375 GM12878 B Lymphocyte Blood EBF1 [Search on ENCODE]
GSM935585 None Endothelial Cell Umbilical Vein FOS [Search on ENCODE]
GSM935398 MCF-10A Epithelium Breast FOS [Search on ENCODE]
GSM935396 MCF-10A Epithelium Breast FOS [Search on ENCODE]
GSM935397 MCF-10A Epithelium Breast FOS [Search on ENCODE]
GSM935438 MCF-10A Epithelium Breast FOS [Search on ENCODE]
GSM1003632 SK-N-SH Neuroblastoma cell Brain JUND [Search on ENCODE]
GSM1010840 SK-N-SH Neuroblastoma cell Brain FOSL2 [Search on ENCODE]
GSM1010901 SK-N-SH Neuroblastoma cell Brain JUND [Search on ENCODE]
GSM1125262 BT-549 Epithelium Mammary Gland JUN [Search on ENCODE]
GSM1331246 RD None Muscle TEAD1 [Search on ENCODE]
GSM1068136 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1503220 None None Coronary artery smooth muscle JUND [Search on ENCODE]
GSM1566733 None Adipocyte None RELA [Search on ENCODE]
GSM1566734 None Adipocyte None RELA [Search on ENCODE]
GSM1703568 None Stromal Cell Endometrium FOSL2 [Search on ENCODE]
GSM1614036 MDA-MB-231 Epithelium Breast JUN [Search on ENCODE]
GSM1716766 LHSAR Epithelium Prostate HOXB13 [Search on ENCODE]
GSM1716768 LHSAR Epithelium Prostate HOXB13 [Search on ENCODE]
ENCSR098YLE_1 HEK293 Epithelium Embryonic Kidney PRDM1 [Search on ENCODE]
ENCSR098YLE_2 HEK293 Epithelium Embryonic Kidney PRDM1 [Search on ENCODE]
GSM1842697 HCC1395 None None BRD4 [Search on ENCODE]
GSM2219878 LNCaP Epithelium Prostate RELA [Search on ENCODE]
GSM2219867 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM2219866 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM2219864 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM2219861 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM2219860 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM2410317 SK-N-SH Neuroblastoma cell Brain EBF3 [Search on ENCODE]
GSM1556337 L1236 Hodgkin Lymphoma Cell None NFKB2 [Search on ENCODE]
GSM2550216 None Fibroblast None EP300 [Search on ENCODE]
GSM2394414 JHU-06 Endothelial Cell None JUN [Search on ENCODE]
GSM2394415 JHU-06 Endothelial Cell None JUN [Search on ENCODE]
GSM2278000 MDA-MB-157 mDA None STAT3 [Search on ENCODE]
GSM2278001 MDA-MB-157 mDA None STAT3 [Search on ENCODE]
GSM2436677 A673 Polygonal Muscle FLI1 [Search on ENCODE]
GSM2436676 A673 Polygonal Muscle FLI1 [Search on ENCODE]
GSM2436679 A673 Polygonal Muscle SRF [Search on ENCODE]
GSM2436678 A673 Polygonal Muscle SRF [Search on ENCODE]
GSM2576176 JHU-06 Endothelial Cell None JUN [Search on ENCODE]
GSM2472122 SK-N-MC None Brain SMARCC1 [Search on ENCODE]
GSM2409708 TTC1240 None Malignant rhabdoid tumor SS18 [Search on ENCODE]
GSM2394422 JHU-06 Endothelial Cell None RELA [Search on ENCODE]
GSM2394424 JHU-06 Endothelial Cell None RELA [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.