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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 40380189-40380190 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM701536 None None Fetal Muscle Back DNase [Search on ENCODE]
GSM701533 None None Fetal Muscle Trunk DNase [Search on ENCODE]
GSM701522 None Epithelium Upper Limb Muscle DNase [Search on ENCODE]
GSM701520 None None Fetal Renal Pelvis Left DNase [Search on ENCODE]
GSM701506 None None Fetal Muscle Arm DNase [Search on ENCODE]
GSM701505 None None Fetal Muscle Leg DNase [Search on ENCODE]
GSM665829 None Epithelium Kidney DNase [Search on ENCODE]
GSM665822 None Epithelium Kidney DNase [Search on ENCODE]
GSM665821 None Epithelium Fetal Kidney Right DNase [Search on ENCODE]
GSM493385 None Cortex Fetal Kidney DNase [Search on ENCODE]
GSM817217 None None Fetal Muscle Back DNase [Search on ENCODE]
GSM817200 None None Fetal Muscle Back DNase [Search on ENCODE]
GSM817216 None None Fetal Muscle Arm DNase [Search on ENCODE]
GSM817218 None Epithelium Fetal Renal Pelvis DNase [Search on ENCODE]
GSM817206 None None Fetal Muscle Leg DNase [Search on ENCODE]
GSM817213 None None Fetal Muscle Leg DNase [Search on ENCODE]
GSM1059531 None None Fetal Muscle Back DNase [Search on ENCODE]
GSM1059534 None None Fetal Muscle Trunk DNase [Search on ENCODE]
GSM1059533 None None Fetal Muscle Leg DNase [Search on ENCODE]
GSM646564 None Fibroblast Skin DNase [Search on ENCODE]
GSM646560 None Epithelium Amnion DNase [Search on ENCODE]
GSM646561 None Epithelium Mammary Gland DNase [Search on ENCODE]
GSM646570 None Endothelial Cell Blood DNase [Search on ENCODE]
GSM909314 H1 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM909312 None Fibroblast Foreskin DNase [Search on ENCODE]
GSM878645 None None Fetal Skin Biceps Left DNase [Search on ENCODE]
GSM878644 None None Fetal Skin Biceps Left DNase [Search on ENCODE]
GSM878636 None None Fetal Skin Abdomen DNase [Search on ENCODE]
GSM878623 None Fibroblast Fetal Skin Back DNase [Search on ENCODE]
GSM878624 None Fibroblast Fetal Skin Back DNase [Search on ENCODE]
GSM878626 None None Fetal Muscle Leg DNase [Search on ENCODE]
GSM878648 None None Fetal Skin Quadriceps Left DNase [Search on ENCODE]
GSM878639 None None Fetal Muscle Back DNase [Search on ENCODE]
GSM878622 None None Fetal Muscle Leg DNase [Search on ENCODE]
GSM878642 None None Fetal Skin Biceps Right DNase [Search on ENCODE]
GSM878647 None None Fetal Skin Quadriceps Right DNase [Search on ENCODE]
GSM878655 None None Fetal Muscle Back DNase [Search on ENCODE]
GSM878633 None Fibroblast Fetal Skin Scalp DNase [Search on ENCODE]
GSM878649 None None Fetal Skin Quadriceps Left DNase [Search on ENCODE]
GSM878611 None None Fetal Muscle Back DNase [Search on ENCODE]
GSM878640 None None Fetal Skin Upper Back DNase [Search on ENCODE]
GSM878646 None None Fetal Skin Quadriceps Right DNase [Search on ENCODE]
GSM878631 None None Fetal Muscle Leg DNase [Search on ENCODE]
GSM878632 None None Fetal Muscle Back DNase [Search on ENCODE]
GSM878625 None None Fetal Muscle Arm DNase [Search on ENCODE]
GSM878641 None None Fetal Skin Upper Back DNase [Search on ENCODE]
GSM878654 None None Fetal Muscle Trunk DNase [Search on ENCODE]
GSM878667 None Cortex Fetal Kidney DNase [Search on ENCODE]
GSM878664 None None Fetal Muscle Trunk DNase [Search on ENCODE]
GSM878635 None None Fetal Skin Abdomen DNase [Search on ENCODE]
GSM878643 None None Fetal Skin Biceps Right DNase [Search on ENCODE]
GSM878634 None Fibroblast Fetal Skin Scalp DNase [Search on ENCODE]
GSM878666 None Epithelium Fetal Kidney DNase [Search on ENCODE]
GSM906380 H1 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM1027330 None None Fetal Muscle Back DNase [Search on ENCODE]
GSM1027349 None None Fetal Muscle Arm DNase [Search on ENCODE]
GSM1027341 None None Fetal Muscle Back DNase [Search on ENCODE]
GSM1027314 None Cortex Fetal Kidney DNase [Search on ENCODE]
GSM1027316 None Cortex Fetal Kidney DNase [Search on ENCODE]
GSM1027343 None Epithelium Fetal Placenta DNase [Search on ENCODE]
GSM817183 None None Fetal Muscle Leg DNase [Search on ENCODE]
GSM817182 None None Fetal Muscle Back DNase [Search on ENCODE]
GSM817179 None None Fetal Muscle Leg DNase [Search on ENCODE]
GSM817171 None None Fetal Muscle Back DNase [Search on ENCODE]
GSM817191 None None Fetal Muscle Arm DNase [Search on ENCODE]
GSM1014510 None Fibroblast Connective Tissue DNase [Search on ENCODE]
GSM1014539 LHCN-M2 Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM1014512 NHDF-neo Fibroblast Skin DNase [Search on ENCODE]
GSM1014514 None Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM1014532 None Endothelial Cell Blood DNase [Search on ENCODE]
GSM1014533 None Endothelial Cell Blood DNase [Search on ENCODE]
GSM1014535 RPMI-7951 Melanoma Cell Skin DNase [Search on ENCODE]
GSM1014508 HA-sp Astrocyte Spinal Cord DNase [Search on ENCODE]
GSM1014527 AG10803 Fibroblast Skin DNase [Search on ENCODE]
GSM1014524 LHCN-M2 Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM1014515 None Myocyte Heart DNase [Search on ENCODE]
GSM1014530 None Fibroblast Heart DNase [Search on ENCODE]
GSM1014531 None Embryonic Fibroblast Foreskin DNase [Search on ENCODE]
GSM1014538 M059J Glial Cell Brain DNase [Search on ENCODE]
GSM774224 None None Fetal Muscle Back DNase [Search on ENCODE]
GSM774209 None Epithelium Fetal Kidney Left DNase [Search on ENCODE]
GSM774223 None None Fetal Muscle Arm DNase [Search on ENCODE]
GSM774242 None None Fetal Muscle Leg DNase [Search on ENCODE]
GSM774215 None Epithelium Fetal Placenta DNase [Search on ENCODE]
GSM774234 None None Fetal Muscle Arm DNase [Search on ENCODE]
GSM774235 None None Fetal Muscle Back DNase [Search on ENCODE]
GSM774222 None Epithelium Fetal Renal Pelvis DNase [Search on ENCODE]
GSM774240 None Fibroblast Foreskin DNase [Search on ENCODE]
GSM849030 None Fibroblast Periodontal Ligament DNase [Search on ENCODE]
GSM849029 None Fibroblast Umbilical Vein DNase [Search on ENCODE]
GSM849026 None Astrocyte Brain DNase [Search on ENCODE]
GSM849028 None Fibroblast Lung DNase [Search on ENCODE]
GSM1220603 None Epithelium Fetal Kidney DNase [Search on ENCODE]
GSM1220605 None Fibroblast Fetal Skin Back DNase [Search on ENCODE]
GSM1220606 None Fibroblast Fetal Skin Scalp DNase [Search on ENCODE]
GSM1220607 None None Fetal Skin Abdomen DNase [Search on ENCODE]
GSM1220608 None None Fetal Skin Upper Back DNase [Search on ENCODE]
GSM1220609 None None Fetal Skin Biceps Right DNase [Search on ENCODE]
GSM1220610 None None Fetal Skin Quadriceps Right DNase [Search on ENCODE]
GSM1338307 None Fibroblast None DNase [Search on ENCODE]
GSM1338308 None Fibroblast None DNase [Search on ENCODE]
GSM1338309 None Fibroblast None DNase [Search on ENCODE]
GSM1338310 None Fibroblast None DNase [Search on ENCODE]
GSM736590 AG04449 Fibroblast Skin DNase [Search on ENCODE]
GSM736551 AG09309 Fibroblast Skin DNase [Search on ENCODE]
GSM736616 AG09309 Fibroblast Skin DNase [Search on ENCODE]
GSM1024777 GM04503 Fibroblast Skin DNase [Search on ENCODE]
GSM736631 None Epithelium Amnion DNase [Search on ENCODE]
GSM736540 None Fibroblast Heart DNase [Search on ENCODE]
GSM736568 None Fibroblast Heart DNase [Search on ENCODE]
GSM736516 None Myocyte Heart DNase [Search on ENCODE]
GSM736547 None Fibroblast Eye DNase [Search on ENCODE]
GSM736515 None Fibroblast Eye DNase [Search on ENCODE]
GSM736572 None Embryonic Fibroblast Foreskin DNase [Search on ENCODE]
GSM736602 None Embryonic Fibroblast Foreskin DNase [Search on ENCODE]
GSM736605 None Embryonic Fibroblast Foreskin DNase [Search on ENCODE]
GSM736524 None Embryonic Fibroblast Foreskin DNase [Search on ENCODE]
GSM736541 None Epithelium Mammary Gland DNase [Search on ENCODE]
GSM736628 None Epithelium Mammary Gland DNase [Search on ENCODE]
GSM736523 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM736609 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM736521 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM736571 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM736621 None Epithelium None DNase [Search on ENCODE]
GSM736555 None Fibroblast Pulmonary Artery DNase [Search on ENCODE]
GSM736528 None Fibroblast Periodontal Ligament DNase [Search on ENCODE]
GSM736632 None Fibroblast Periodontal Ligament DNase [Search on ENCODE]
GSM736574 None Fibroblast Lung DNase [Search on ENCODE]
GSM736503 None Fibroblast Lung DNase [Search on ENCODE]
GSM736499 None Endothelial Cell Kidney DNase [Search on ENCODE]
GSM736560 None Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM736553 None Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM736491 None Fibroblast Connective Tissue DNase [Search on ENCODE]
GSM736534 None Fibroblast Connective Tissue DNase [Search on ENCODE]
GSM1024771 LHCN-M2 Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM1024787 LHCN-M2 Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM1024786 LHCN-M2 Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM1024773 M059J Glial Cell Brain DNase [Search on ENCODE]
GSM1024794 M059J Glial Cell Brain DNase [Search on ENCODE]
GSM736520 NHDF-Ad Fibroblast Skin DNase [Search on ENCODE]
GSM736567 NHDF-Ad Fibroblast Skin DNase [Search on ENCODE]
GSM736498 NHDF-neo Fibroblast Skin DNase [Search on ENCODE]
GSM736546 NHDF-neo Fibroblast Skin DNase [Search on ENCODE]
GSM736612 NHLF Fibroblast Lung DNase [Search on ENCODE]
GSM1024779 RPMI-7951 Melanoma Cell Skin DNase [Search on ENCODE]
GSM1024793 RPMI-7951 Melanoma Cell Skin DNase [Search on ENCODE]
GSM736497 SKMC Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM736593 SKMC Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM763534 BJ Fibroblast Skin DNase [Search on ENCODE]
GSM1443801 hMADS-3 Adipocyte Adipose DNase [Search on ENCODE]
GSM1443802 hMADS-3 Adipocyte Adipose DNase [Search on ENCODE]
GSM1566739 None Adipocyte None DNase [Search on ENCODE]
GSM1855976 MDA-MB-231 Epithelium Breast ATAC-seq [Search on ENCODE]
GSM1855977 MDA-MB-231 Epithelium Breast ATAC-seq [Search on ENCODE]
ENCSR240TPI_1 BJ Fibroblast Skin DNase [Search on ENCODE]
ENCSR240TPI_2 BJ Fibroblast Skin DNase [Search on ENCODE]
ENCSR346IHH_1 Daoy Polygonal Cerebellum DNase [Search on ENCODE]
ENCSR346IHH_2 Daoy Polygonal Cerebellum DNase [Search on ENCODE]
ENCSR346JWH_1 A673 Polygonal Muscle DNase [Search on ENCODE]
ENCSR346JWH_2 A673 Polygonal Muscle DNase [Search on ENCODE]
ENCSR405TXU_1 None Adipocyte None DNase [Search on ENCODE]
ENCSR512CWR None None Umbilical Cord DNase [Search on ENCODE]
ENCSR548MMD_1 BJ Fibroblast Skin DNase [Search on ENCODE]
ENCSR548MMD_2 BJ Fibroblast Skin DNase [Search on ENCODE]
ENCSR932KWJ_1 A-172 Glial Cell Brain DNase [Search on ENCODE]
ENCSR932KWJ_2 A-172 Glial Cell Brain DNase [Search on ENCODE]
ENCSR217TAW_1 None Fibroblast None DNase [Search on ENCODE]
ENCSR217TAW_2 None Fibroblast None DNase [Search on ENCODE]
ENCSR809CEA_1 H4 Neuroglioma cell Brain DNase [Search on ENCODE]
ENCSR532CRI_2 None None Limb DNase [Search on ENCODE]
ENCSR749BWV_2 None None Heart DNase [Search on ENCODE]
ENCSR820WLP_2 None Stem cell None DNase [Search on ENCODE]
GSM1972152 HT1080 None Connective Tissue ATAC-seq [Search on ENCODE]
GSM1972149 HT1080 None Connective Tissue ATAC-seq [Search on ENCODE]
GSM2174880 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2174878 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2174877 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2241148 T47D Epithelium Mammary Gland ATAC-seq [Search on ENCODE]
GSM1876024 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM1876026 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM1876021 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM1876022 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM2224597 LoVo None Colon DNase [Search on ENCODE]
GSM2676282 MCF-10A Epithelium Breast DNase [Search on ENCODE]
GSM2218788 None Fibroblast Fetal Skin ATAC-seq [Search on ENCODE]
GSM2430672 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.