HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 1855772-1855773 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM623516 K562 Erythroblast Bone Marrow DNase [Search on ENCODE]
GSM646567 K562 Erythroblast Bone Marrow DNase [Search on ENCODE]
GSM816658 GM19238 Lymphoblastoid Blood DNase [Search on ENCODE]
GSM1027332 None Epithelium Fetal Placenta DNase [Search on ENCODE]
GSM736588 MCF-7 Epithelium Breast DNase [Search on ENCODE]
ENCSR515EWI_1 Caki-2 None Kidney DNase [Search on ENCODE]
ENCSR627GNV_2 K562 Erythroblast Bone Marrow DNase [Search on ENCODE]
ENCSR622RJN_1 K562 Erythroblast Bone Marrow DNase [Search on ENCODE]
ENCSR121ZSL_1 None Trophoblast cell None DNase [Search on ENCODE]
ENCSR499IFY_1 None None Placenta DNase [Search on ENCODE]
ENCSR514EOB_1 K562 Erythroblast Bone Marrow DNase [Search on ENCODE]
ENCSR593LTJ_1 None Trophoblast cell None DNase [Search on ENCODE]
ENCSR593LTJ_2 None Trophoblast cell None DNase [Search on ENCODE]
ENCSR605SNG_1 K562 Erythroblast Bone Marrow DNase [Search on ENCODE]
ENCSR809LCE_1 None Trophoblast cell None DNase [Search on ENCODE]
ENCSR964MZQ_1 None Trophoblast cell None DNase [Search on ENCODE]
GSM489286 GM19238 Lymphoblastoid Blood DNase [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.