Home
Virus
Gene
Disease
Dataset
Download
Help
 
HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 179970242-179970243 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM770759 AB32 Epithelium Mammary Gland PR [Search on ENCODE]
GSM1070124 MM1.S B Lymphocyte Blood BRD4 [Search on ENCODE]
GSM980664 LNCaP Epithelium Prostate NR3C1 [Search on ENCODE]
GSM980658 VCaP Epithelium Prostate AR [Search on ENCODE]
GSM980663 LNCaP Epithelium Prostate AR [Search on ENCODE]
GSM980657 VCaP Epithelium Prostate AR [Search on ENCODE]
GSM980665 LNCaP Epithelium Prostate NR3C1 [Search on ENCODE]
GSM999792 None Leiomyoma Cell None PR [Search on ENCODE]
GSM1176699 HEK293 Epithelium Embryonic Kidney NR3C1 [Search on ENCODE]
GSM1176701 HEK293 Epithelium Embryonic Kidney NR3C1 [Search on ENCODE]
GSM1176704 HEK293 Epithelium Embryonic Kidney SUMO2 [Search on ENCODE]
GSM817347 VCaP Epithelium Prostate AR [Search on ENCODE]
GSM817349 VCaP Epithelium Prostate AR [Search on ENCODE]
GSM817350 VCaP Epithelium Prostate AR [Search on ENCODE]
GSM1328950 VCaP Epithelium Prostate AR [Search on ENCODE]
GSM1328952 VCaP Epithelium Prostate AR [Search on ENCODE]
GSM1328953 VCaP Epithelium Prostate AR [Search on ENCODE]
GSM1328954 VCaP Epithelium Prostate AR [Search on ENCODE]
GSM1328955 VCaP Epithelium Prostate AR [Search on ENCODE]
GSM1328957 VCaP Epithelium Prostate AR [Search on ENCODE]
GSM1328958 VCaP Epithelium Prostate AR [Search on ENCODE]
GSM534494 None Stromal Cell Adipose PPARG [Search on ENCODE]
GSM534493 None Stromal Cell Adipose PPARG [Search on ENCODE]
GSM1164141 DU145 Epithelium Prostate AR [Search on ENCODE]
GSM1164151 DU145 Epithelium Prostate AR [Search on ENCODE]
GSM1164152 DU145 Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1308229 HEK293 Epithelium Embryonic Kidney AR [Search on ENCODE]
GSM1308230 HEK293 Epithelium Embryonic Kidney AR [Search on ENCODE]
GSM1308232 HEK293 Epithelium Embryonic Kidney AR [Search on ENCODE]
GSM1308233 HEK293 Epithelium Embryonic Kidney AR [Search on ENCODE]
GSM1071280 LNCaP Epithelium Prostate AR [Search on ENCODE]
GSM1071284 None Epithelium Prostate AR [Search on ENCODE]
GSM1405407 None Monocyte None NR3C1 [Search on ENCODE]
GSM1410768 VCaP Epithelium Prostate AR [Search on ENCODE]
GSM1410772 VCaP Epithelium Prostate AR [Search on ENCODE]
GSM1354830 VCaP Epithelium Prostate AR [Search on ENCODE]
GSM1354831 VCaP Epithelium Prostate AR [Search on ENCODE]
GSM1354837 VCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1463459 VCaP Epithelium Prostate AR [Search on ENCODE]
GSM1463460 VCaP Epithelium Prostate AR [Search on ENCODE]
GSM1463461 VCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1463462 VCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1463463 VCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1463464 VCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1527834 LNCaP Epithelium Prostate AR [Search on ENCODE]
GSM1527835 LNCaP Epithelium Prostate AR [Search on ENCODE]
GSM1637306 Nalm6 B cell precursor Blood NR3C1 [Search on ENCODE]
GSM1637307 Nalm6 B cell precursor Blood NR3C1 [Search on ENCODE]
GSM1637309 Nalm6 B cell precursor Blood NR3C1 [Search on ENCODE]
GSM1566728 None Adipocyte None MED1 [Search on ENCODE]
GSM1566729 None Adipocyte None MED1 [Search on ENCODE]
GSM1566731 None Adipocyte None MED1 [Search on ENCODE]
GSM1566733 None Adipocyte None RELA [Search on ENCODE]
GSM1566734 None Adipocyte None RELA [Search on ENCODE]
GSM1684636 None Mesenchymal Stem Cell None CEBPB [Search on ENCODE]
GSM1684637 None Mesenchymal Stem Cell None NR3C1 [Search on ENCODE]
GSM1703567 None Stromal Cell Endometrium PGR [Search on ENCODE]
GSM1703607 None Stromal Cell Endometrium FOXO1 [Search on ENCODE]
GSM1709938 None Adipocyte None BRD4 [Search on ENCODE]
GSM1571739 None None Adipose PPARG [Search on ENCODE]
GSM1358395 None None Prostate AR [Search on ENCODE]
GSM1358396 None None Prostate AR [Search on ENCODE]
GSM1358397 None None Prostate AR [Search on ENCODE]
GSM1358398 None None Prostate AR [Search on ENCODE]
GSM1358400 None None Prostate AR [Search on ENCODE]
GSM1358404 None None Prostate AR [Search on ENCODE]
GSM1358405 None None Prostate AR [Search on ENCODE]
GSM1358407 None None Prostate AR [Search on ENCODE]
GSM1358408 None None Prostate AR [Search on ENCODE]
GSM1358411 None None Prostate AR [Search on ENCODE]
GSM1358412 None None Prostate AR [Search on ENCODE]
GSM1527025 LNCaP Epithelium Prostate AR [Search on ENCODE]
GSM1716765 LHSAR Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1716766 LHSAR Epithelium Prostate HOXB13 [Search on ENCODE]
GSM1716767 LHSAR Epithelium Prostate HOXB13 [Search on ENCODE]
GSM1716768 LHSAR Epithelium Prostate HOXB13 [Search on ENCODE]
GSM1716769 LHSAR Epithelium Prostate AR [Search on ENCODE]
GSM1716770 LHSAR Epithelium Prostate AR [Search on ENCODE]
ENCSR168SMX_1 None None Liver NR2F2 [Search on ENCODE]
ENCSR168SMX_2 None None Liver NR2F2 [Search on ENCODE]
ENCSR230ZWH_2 None None Liver RAD21 [Search on ENCODE]
ENCSR255CTA_3 A549 Epithelium Lung NR3C1 [Search on ENCODE]
ENCSR338MMB_2 None None Liver NR2F2 [Search on ENCODE]
ENCSR367UUC_1 None None gastroesophageal sphincter POLR2A [Search on ENCODE]
ENCSR385RUW_1 A549 Epithelium Lung NR3C1 [Search on ENCODE]
ENCSR424JOE_2 A549 Epithelium Lung NR3C1 [Search on ENCODE]
ENCSR720DXT_3 A549 Epithelium Lung NR3C1 [Search on ENCODE]
ENCSR724FCJ_1 None None Sigmoid Colon POLR2A [Search on ENCODE]
ENCSR919OXR_1 A549 Epithelium Lung NR3C1 [Search on ENCODE]
GSM1691150 LNCaP Epithelium Prostate AR [Search on ENCODE]
GSM1586665 LNCaP Epithelium Prostate AR [Search on ENCODE]
GSM1586664 LNCaP Epithelium Prostate AR [Search on ENCODE]
GSM1586661 C4-2 None Prostate AR [Search on ENCODE]
GSM1586660 C4-2 None Prostate AR [Search on ENCODE]
GSM2103046 BEAS-2B Epithelium Lung NR3C1 [Search on ENCODE]
GSM2103045 BEAS-2B Epithelium Lung NR3C1 [Search on ENCODE]
GSM2103042 BEAS-2B Epithelium Lung NR3C1 [Search on ENCODE]
GSM2103041 BEAS-2B Epithelium Lung NR3C1 [Search on ENCODE]
GSM2058880 VCaP Epithelium Prostate AR [Search on ENCODE]
GSM2058879 VCaP Epithelium Prostate AR [Search on ENCODE]
GSM2086307 VCaP Epithelium Prostate AR [Search on ENCODE]
GSM2086306 VCaP Epithelium Prostate AR [Search on ENCODE]
GSM2086302 VCaP Epithelium Prostate AR [Search on ENCODE]
GSM2086297 VCaP Epithelium Prostate AR [Search on ENCODE]
GSM2086296 VCaP Epithelium Prostate AR [Search on ENCODE]
GSM2086293 VCaP Epithelium Prostate AR [Search on ENCODE]
GSM2086292 VCaP Epithelium Prostate AR [Search on ENCODE]
GSM2302870 MM1.S B Lymphocyte Blood HDAC4 [Search on ENCODE]
GSM2330596 SUM159PT Mammary carcinoma cell Breast BRD4 [Search on ENCODE]
GSM2330590 SUM159PT Mammary carcinoma cell Breast BRD4 [Search on ENCODE]
GSM2330589 SUM159PT Mammary carcinoma cell Breast BRD4 [Search on ENCODE]
GSM2330584 SUM159PT Mammary carcinoma cell Breast EP300 [Search on ENCODE]
GSM2330582 SUM159PT Mammary carcinoma cell Breast BRD4 [Search on ENCODE]
GSM2330580 SUM159PT Mammary carcinoma cell Breast BRD4 [Search on ENCODE]
GSM2154991 MCF-7 None Breast NR3C1 [Search on ENCODE]
GSM2519945 None None Muscle NR3C1 [Search on ENCODE]
GSM2519947 None None Muscle NR3C1 [Search on ENCODE]
GSM2519949 None None Muscle NR3C1 [Search on ENCODE]
GSM2519948 None None Muscle NR3C1 [Search on ENCODE]
GSM2644593 T47D Epithelium Mammary Gland PR [Search on ENCODE]
GSM2592808 None Macrophage Blood SPI1 [Search on ENCODE]
GSM2802959 hMSC-TERT4 None None MED1 [Search on ENCODE]
GSM2735382 MCF-10A Epithelium Breast NR3C1 [Search on ENCODE]
GSM2537226 VCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM2519950 None None Muscle KLF15 [Search on ENCODE]
GSM2519951 None None Muscle KLF15 [Search on ENCODE]
GSM2802953 hMSC-TERT4 None None MED1 [Search on ENCODE]
GSM2612457 VCaP Epithelium Prostate ERG [Search on ENCODE]
GSM2612456 VCaP Epithelium Prostate AR [Search on ENCODE]
GSM717393 VCaP Epithelium Prostate AR [Search on ENCODE]
GSM717394 VCaP Epithelium Prostate AR [Search on ENCODE]
GSM717396 VCaP Epithelium Prostate ERG [Search on ENCODE]
GSM717397 VCaP Epithelium Prostate ERG [Search on ENCODE]
GSM2661793 THP-1 Monocyte Blood GLI2 [Search on ENCODE]
GSM2661795 THP-1 Monocyte Blood GLI2 [Search on ENCODE]
GSM2735380 MCF-10A Epithelium Breast NR3C1 [Search on ENCODE]
GSM2735376 MCF-10A Epithelium Breast NR3C1 [Search on ENCODE]
GSM2735378 MCF-10A Epithelium Breast NR3C1 [Search on ENCODE]
GSM2735379 MCF-10A Epithelium Breast NR3C1 [Search on ENCODE]
GSM2802957 hMSC-TERT4 None None MED1 [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.