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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 179970242-179970243 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM534480 None Stromal Cell Adipose H3K4me2 [Search on ENCODE]
GSM916058 None Mesenchymal Stem Cell Bone Marrow H3K27ac [Search on ENCODE]
GSM1112786 None Mesenchymal Stem Cell Bone Marrow H3K27ac [Search on ENCODE]
GSM1112787 None Mesenchymal Stem Cell Bone Marrow H3K27ac [Search on ENCODE]
GSM1112794 None Mesenchymal Stem Cell Bone Marrow H3K27ac [Search on ENCODE]
GSM669917 None Chondrocyte Cartilage H3K9ac [Search on ENCODE]
GSM621691 None None Skeletal Muscle H3K9ac [Search on ENCODE]
GSM733768 None Myoblast Skeletal Muscle H3K4me2 [Search on ENCODE]
GSM1550886 GM18517 Lymphoblastoid None H3K27ac [Search on ENCODE]
ENCSR016PSC_1 A549 Epithelium Lung H3K4me2 [Search on ENCODE]
ENCSR016PSC_2 A549 Epithelium Lung H3K4me2 [Search on ENCODE]
ENCSR016PSC_3 A549 Epithelium Lung H3K4me2 [Search on ENCODE]
ENCSR361FWQ_2 MM.1S B Lymphoblast Blood H3K4me3 [Search on ENCODE]
ENCSR428DFL_1 A549 Epithelium Lung H3K4me2 [Search on ENCODE]
ENCSR428DFL_3 A549 Epithelium Lung H3K4me2 [Search on ENCODE]
ENCSR758OEC_2 MM.1S B Lymphoblast Blood H3K27ac [Search on ENCODE]
ENCSR766NHB_1 A549 Epithelium Lung H3K4me2 [Search on ENCODE]
ENCSR766NHB_3 A549 Epithelium Lung H3K4me2 [Search on ENCODE]
ENCSR774KCU_2 A549 Epithelium Lung H3K4me2 [Search on ENCODE]
ENCSR774KCU_3 A549 Epithelium Lung H3K4me2 [Search on ENCODE]
ENCSR834LCU_1 A549 Epithelium Lung H3K4me2 [Search on ENCODE]
ENCSR834LCU_2 A549 Epithelium Lung H3K4me2 [Search on ENCODE]
ENCSR905REY_3 A549 Epithelium Lung H3K4me2 [Search on ENCODE]
ENCSR906NGD_2 None Fibroblast None H3K4me1 [Search on ENCODE]
GSM2188469 None Osteoblast None H3K27ac [Search on ENCODE]
GSM2188467 None Osteoblast None H3K27ac [Search on ENCODE]
GSM2188465 None Osteoblast None H3K27ac [Search on ENCODE]
GSM1922973 None Neurosphere None H3K27ac [Search on ENCODE]
GSM1907214 LNCaP Epithelium Prostate H3K27ac [Search on ENCODE]
GSM2550233 None Progenitor Cells None H3K27ac [Search on ENCODE]
GSM2258705 MCF-10A Epithelium Breast H3K27ac [Search on ENCODE]
GSM2258704 MCF-10A Epithelium Breast H3K27ac [Search on ENCODE]
GSM2877104 K562 Erythroblast Bone Marrow H3K27ac [Search on ENCODE]
GSM2877103 K562 Erythroblast Bone Marrow H3K27ac [Search on ENCODE]
GSM2949414 MCF-10A Epithelium Breast H3K4me3 [Search on ENCODE]
GSM2258713 MCF-10A Epithelium Breast H3K4me3 [Search on ENCODE]
GSM2258710 MCF-10A Epithelium Breast H3K4me1 [Search on ENCODE]
GSM2550198 None Endothelial Cell None H3K27ac [Search on ENCODE]
GSM2301919 RPM-MC Epithelium None H3K4me3 [Search on ENCODE]
GSM2301910 IMEC Epithelium Breast H3K27ac [Search on ENCODE]
GSM605330 H1 Embryonic Stem Cell Embryo H4K5ac [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.