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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 8797486-8797487 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM610336 K562 Erythroblast Bone Marrow FOS [Search on ENCODE]
GSM935551 MCF-10A Epithelium Breast STAT3 [Search on ENCODE]
GSM1122847 None Epithelium Mammary Gland FAIRE [Search on ENCODE]
GSM1122848 None Epithelium Mammary Gland FAIRE [Search on ENCODE]
GSM934616 LX2 Hepatic Stellate Cell None SMAD3 [Search on ENCODE]
GSM934615 LX2 Hepatic Stellate Cell None SMAD3 [Search on ENCODE]
GSM935630 A549 Epithelium Lung CEBPB [Search on ENCODE]
GSM935500 HeLa-S3 Epithelium Cervix EP300 [Search on ENCODE]
GSM935560 HeLa-S3 Epithelium Cervix RFX5 [Search on ENCODE]
GSM935552 HeLa-S3 Epithelium Cervix BRCA1 [Search on ENCODE]
GSM935328 HeLa-S3 Epithelium Cervix JUND [Search on ENCODE]
GSM935341 HeLa-S3 Epithelium Cervix JUN [Search on ENCODE]
GSM935290 HeLa-S3 Epithelium Cervix MAFK [Search on ENCODE]
GSM935571 HeLa-S3 Epithelium Cervix RAD21 [Search on ENCODE]
GSM935553 HeLa-S3 Epithelium Cervix CEBPB [Search on ENCODE]
GSM935276 HeLa-S3 Epithelium Cervix STAT3 [Search on ENCODE]
GSM935519 IMR90 Fibroblast Lung CEBPB [Search on ENCODE]
GSM935457 MCF-10A Epithelium Breast STAT3 [Search on ENCODE]
GSM935456 MCF-10A Epithelium Breast POLR2A [Search on ENCODE]
GSM935398 MCF-10A Epithelium Breast FOS [Search on ENCODE]
GSM935400 MCF-10A Epithelium Breast E2F4 [Search on ENCODE]
GSM935491 MCF-10A Epithelium Breast MYC [Search on ENCODE]
GSM935399 MCF-10A Epithelium Breast STAT3 [Search on ENCODE]
GSM935588 MCF-10A Epithelium Breast POLR2A [Search on ENCODE]
GSM935396 MCF-10A Epithelium Breast FOS [Search on ENCODE]
GSM935397 MCF-10A Epithelium Breast FOS [Search on ENCODE]
GSM935591 MCF-10A Epithelium Breast STAT3 [Search on ENCODE]
GSM935438 MCF-10A Epithelium Breast FOS [Search on ENCODE]
GSM935441 MCF-10A Epithelium Breast MYC [Search on ENCODE]
GSM1010748 A549 Epithelium Lung FOSL2 [Search on ENCODE]
GSM1010756 HCT-116 None Colon FOSL1 [Search on ENCODE]
GSM1246714 NCI-H441 Epithelium Lung SMAD3 [Search on ENCODE]
GSM1554224 HT29 Epithelium Colon SOX9 [Search on ENCODE]
GSM1678029 PC-3 Epithelium Prostate DAXX [Search on ENCODE]
GSM1684643 None Mesenchymal Stem Cell None CEBPB [Search on ENCODE]
GSM791412 LS180 Epithelium Colon CEBPB [Search on ENCODE]
GSM1517095 HeLa Epithelium Cervix EP300 [Search on ENCODE]
GSM1716769 LHSAR Epithelium Prostate AR [Search on ENCODE]
GSM1716770 LHSAR Epithelium Prostate AR [Search on ENCODE]
GSM1705258 None Embryonic Stem Cell Embryo POU5F1 [Search on ENCODE]
ENCSR216GEB_1 A549 Epithelium Lung CEBPB [Search on ENCODE]
ENCSR474DCX_1 A549 Epithelium Lung CEBPB [Search on ENCODE]
ENCSR620VIC_2 K562 Erythroblast Bone Marrow CEBPG [Search on ENCODE]
ENCSR701TCU_2 A549 Epithelium Lung CEBPB [Search on ENCODE]
ENCSR752AQK_3 A549 Epithelium Lung CEBPB [Search on ENCODE]
ENCSR853DWE_3 A549 Epithelium Lung CEBPB [Search on ENCODE]
ENCSR957KYB_1 IMR90 Fibroblast Lung BHLHE40 [Search on ENCODE]
GSM1919987 CFPAC-1 None Pancreatic ductal FOXA1 [Search on ENCODE]
GSM1919985 CFPAC-1 None Pancreatic ductal FOXA1 [Search on ENCODE]
GSM1919982 CFPAC-1 original PDAC cell line Pancreatic ductal KLF4 [Search on ENCODE]
GSM1574277 CFPAC-1 None Pancreatic ductal KLF5 [Search on ENCODE]
GSM1574276 CFPAC-1 None Pancreatic ductal IRF1 [Search on ENCODE]
GSM1574274 CFPAC-1 None Pancreatic ductal FOXA1 [Search on ENCODE]
GSM1691148 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM2042914 HT29 colorectal adenocarcinoma None JUND [Search on ENCODE]
GSM2042913 HT29 colorectal adenocarcinoma None JUND [Search on ENCODE]
GSM2042908 HT29 colorectal adenocarcinoma None POLR2A [Search on ENCODE]
GSM2042906 HT29 colorectal adenocarcinoma None POLR2A [Search on ENCODE]
GSM2042905 HT29 colorectal adenocarcinoma None POLR2A [Search on ENCODE]
GSM2042902 HT29 colorectal adenocarcinoma None POLR2A [Search on ENCODE]
GSM2042900 HT29 colorectal adenocarcinoma None POLR2A [Search on ENCODE]
GSM2042899 HT29 colorectal adenocarcinoma None POLR2A [Search on ENCODE]
GSM2042858 HT29 colorectal adenocarcinoma None PPARG [Search on ENCODE]
GSM2042856 HT29 colorectal adenocarcinoma None PPARG [Search on ENCODE]
GSM2042854 HT29 colorectal adenocarcinoma None PPARG [Search on ENCODE]
GSM2042852 HT29 colorectal adenocarcinoma None NR1H3 [Search on ENCODE]
GSM2042850 HT29 colorectal adenocarcinoma None NR1H3 [Search on ENCODE]
GSM2042846 HT29 colorectal adenocarcinoma None NR1H3 [Search on ENCODE]
GSM2042845 HT29 colorectal adenocarcinoma None NR1H2 [Search on ENCODE]
GSM2330600 SUM159PT Mammary carcinoma cell Breast BRD4 [Search on ENCODE]
GSM2330597 SUM159PT Mammary carcinoma cell Breast BRD4 [Search on ENCODE]
GSM2330591 SUM159PT Mammary carcinoma cell Breast BRD4 [Search on ENCODE]
GSM2330590 SUM159PT Mammary carcinoma cell Breast BRD4 [Search on ENCODE]
GSM2330589 SUM159PT Mammary carcinoma cell Breast BRD4 [Search on ENCODE]
GSM2330584 SUM159PT Mammary carcinoma cell Breast EP300 [Search on ENCODE]
GSM2330583 SUM159PT Mammary carcinoma cell Breast EP300 [Search on ENCODE]
GSM2330582 SUM159PT Mammary carcinoma cell Breast BRD4 [Search on ENCODE]
GSM2330579 SUM159PT Mammary carcinoma cell Breast BRD4 [Search on ENCODE]
GSM2330568 SUM159PT None Breast CEBPB [Search on ENCODE]
GSM2330567 SUM159PT None Breast CEBPB [Search on ENCODE]
GSM2330566 SUM159PT None Breast CEBPB [Search on ENCODE]
GSM2330565 SUM159PT None Breast CEBPB [Search on ENCODE]
GSM2401468 BJ Fibroblast Skin FOXA2 [Search on ENCODE]
GSM2401469 BJ Fibroblast Skin FOXA2 [Search on ENCODE]
GSM2278004 HCC70 Epithelium Breast STAT3 [Search on ENCODE]
GSM2401456 KerCT None None FOXA2 [Search on ENCODE]
GSM2430675 BJ Fibroblast Skin FOXA2 [Search on ENCODE]
GSM2977010 None Keratinocyte None PRMT1 [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.