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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 8797486-8797487 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM1095930 None Epithelium Cervix H3.3 [Search on ENCODE]
GSM317586 None Haematopoietic Progenitor Cell Bone Marrow H3K4me1 [Search on ENCODE]
GSM1204475 MDA-MB-231 Epithelium Breast H3K27ac [Search on ENCODE]
GSM1418961 IMR90 Fibroblast Lung H3K4me1 [Search on ENCODE]
GSM1566555 KB Cell Epithelium HeLa contaminant H3K4me1 [Search on ENCODE]
GSM1566556 KB Cell Epithelium HeLa contaminant H3K4me1 [Search on ENCODE]
GSM1566560 KB Cell Epithelium HeLa contaminant H3K27ac [Search on ENCODE]
GSM1446921 None Keratinocyte None H3K27ac [Search on ENCODE]
GSM1446922 None Keratinocyte None H3K27ac [Search on ENCODE]
GSM1663035 IOE11 Epithelium Ovary H3K27ac [Search on ENCODE]
GSM1663048 IOE4 Epithelium Ovary H3K4me1 [Search on ENCODE]
GSM1645724 None Keratinocyte None H3K27ac [Search on ENCODE]
GSM1645725 None Keratinocyte None H3K27ac [Search on ENCODE]
GSM1574237 None None Pancreatic ductal H3K27ac [Search on ENCODE]
GSM1607405 None Stem cell Foreskin H3K27ac [Search on ENCODE]
GSM2037787 HCC827 Epithelium Lung H3K27ac [Search on ENCODE]
ENCSR016PSC_1 A549 Epithelium Lung H3K4me2 [Search on ENCODE]
ENCSR016PSC_3 A549 Epithelium Lung H3K4me2 [Search on ENCODE]
ENCSR215DID_1 A549 Epithelium Lung H3K4me2 [Search on ENCODE]
ENCSR215DID_2 A549 Epithelium Lung H3K4me2 [Search on ENCODE]
ENCSR215DID_3 A549 Epithelium Lung H3K4me2 [Search on ENCODE]
ENCSR225AOO_3 A549 Epithelium Lung H3K4me1 [Search on ENCODE]
ENCSR462JVS_2 A549 Epithelium Lung H3K4me1 [Search on ENCODE]
ENCSR692JHM_1 A549 Epithelium Lung H3K4me2 [Search on ENCODE]
ENCSR692JHM_2 A549 Epithelium Lung H3K4me2 [Search on ENCODE]
ENCSR726MAP_1 A549 Epithelium Lung H3K4me1 [Search on ENCODE]
ENCSR726MAP_3 A549 Epithelium Lung H3K4me1 [Search on ENCODE]
ENCSR766NHB_3 A549 Epithelium Lung H3K4me2 [Search on ENCODE]
ENCSR774KCU_2 A549 Epithelium Lung H3K4me2 [Search on ENCODE]
ENCSR834LCU_1 A549 Epithelium Lung H3K4me2 [Search on ENCODE]
GSM2330562 SUM159PT Mammary carcinoma cell Breast H3K27ac [Search on ENCODE]
GSM2330561 SUM159PT Mammary carcinoma cell Breast H3K27ac [Search on ENCODE]
GSM2572315 None Keratinocyte Foreskin H3K27ac [Search on ENCODE]
GSM1574254 PT45-P1 None Pancreatic ductal H3K4me1 [Search on ENCODE]
GSM1574245 CFPAC-1 None Pancreatic ductal H3K4me1 [Search on ENCODE]
GSM2187239 DU145 Epithelium Prostate H3K4me1 [Search on ENCODE]
GSM2175576 HCT-116 Human colorectal tumor None H3K4me1 [Search on ENCODE]
GSM2067519 MCF-7 None Breast H3K4me1 [Search on ENCODE]
GSM2330569 SUM159PT Mammary carcinoma cell Breast H3K4me1 [Search on ENCODE]
GSM2258704 MCF-10A Epithelium Breast H3K27ac [Search on ENCODE]
GSM2667961 HCT-116 None HCT116 H3K27ac [Search on ENCODE]
GSM2247244 None Keratinocyte None H3K27ac [Search on ENCODE]
GSM2247245 None Keratinocyte None H3K27ac [Search on ENCODE]
GSM2711386 HCT-116 None HCT116 H3K4me1 [Search on ENCODE]
GSM2359489 H3122 None Lung H3K27ac [Search on ENCODE]
GSM2301909 IMEC Epithelium Breast H3K4me3 [Search on ENCODE]
GSM2711387 HCT-116 None HCT116 H3K4me1 [Search on ENCODE]
GSM2809617 HCT-116 None Colon H3K27ac [Search on ENCODE]
GSM2711385 HCT-116 None HCT116 H3K4me1 [Search on ENCODE]
GSM2667958 HCT-116 None HCT116 H3K27ac [Search on ENCODE]
GSM2258710 MCF-10A Epithelium Breast H3K4me1 [Search on ENCODE]
GSM2060768 PrEC Epithelium Prostate H3K27ac [Search on ENCODE]
GSM2496161 None Keratinocyte None H3K27ac [Search on ENCODE]
GSM2550191 None Progenitor Cells None H3K27ac [Search on ENCODE]
GSM2550193 None Progenitor Cells None H3 [Search on ENCODE]
GSM2809622 HCT-116 None Colon H3K4me1 [Search on ENCODE]
GSM2301915 IMEC Epithelium Breast H3K27ac [Search on ENCODE]
GSM2301914 IMEC Epithelium Breast H3K4me3 [Search on ENCODE]
GSM2301910 IMEC Epithelium Breast H3K27ac [Search on ENCODE]
GSM2550256 None Fibroblast None H3 [Search on ENCODE]
GSM2809621 HCT-116 None Colon H3K4me1 [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.