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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 32949568-32949616 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM301581 HEK293T Epithelium Embryonic Kidney POLR2A [Search on ENCODE]
GSM301568 HEK293T Epithelium Embryonic Kidney POLR2A [Search on ENCODE]
GSM651557 None CD36 Cell None SMARCA4 [Search on ENCODE]
GSM651558 None CD36 Cell None SMARCA4 [Search on ENCODE]
GSM1099031 MDA-MB-453 Epithelium Mammary Gland FOXA1 [Search on ENCODE]
GSM1122305 ME-1 Leukemia Cell None MYH11 [Search on ENCODE]
GSM733760 None Myoblast Skeletal Muscle H2AZ [Search on ENCODE]
GSM1068136 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1068137 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1340254 C4-2 Epithelium None ARRB1 [Search on ENCODE]
GSM1354836 VCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1354837 VCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1543791 LNCaP Epithelium Prostate TOP1 [Search on ENCODE]
GSM1543792 LNCaP Epithelium Prostate TOP1 [Search on ENCODE]
GSM1577753 None T Lymphocyte Blood STAT5B [Search on ENCODE]
GSM1777597 VCaP Epithelium Prostate SUMO2 [Search on ENCODE]
GSM1777601 VCaP Epithelium Prostate SUMO2 [Search on ENCODE]
GSM1777604 VCaP Epithelium Prostate SUMO2 [Search on ENCODE]
ENCSR017QBI_1 HEK293 Epithelium Embryonic Kidney ZNF600 [Search on ENCODE]
ENCSR017QBI_2 HEK293 Epithelium Embryonic Kidney ZNF600 [Search on ENCODE]
ENCSR528PSI_1 HepG2 Epithelium Liver HLF [Search on ENCODE]
ENCSR528PSI_2 HepG2 Epithelium Liver HLF [Search on ENCODE]
ENCSR833FWC_1 None None Colon CTCF [Search on ENCODE]
GSM1873044 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1873043 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1873040 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1538430 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1691142 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM2305255 LNCaP None LNCaP cells MYC [Search on ENCODE]
GSM2305254 LNCaP None LNCaP cells MYC [Search on ENCODE]
GSM2305253 LNCaP None LNCaP cells MYC [Search on ENCODE]
GSM2305252 LNCaP None LNCaP cells MYC [Search on ENCODE]
GSM2305251 LNCaP None LNCaP cells MYC [Search on ENCODE]
GSM2219867 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM2464863 None Neuron None MED1 [Search on ENCODE]
GSM2466584 293T None None ZNF534 [Search on ENCODE]
GSM2537229 VCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM2537226 VCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM2537227 VCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM2537234 VCaP Epithelium Prostate HOXB13 [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.