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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 32949568-32949616 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM701512 None Epithelium Fetal Lung Left DNase [Search on ENCODE]
GSM665831 None Epithelium Fetal Heart DNase [Search on ENCODE]
GSM878630 None Epithelium Fetal Heart DNase [Search on ENCODE]
GSM723023 None Epithelium Fetal Heart DNase [Search on ENCODE]
GSM774203 None Epithelium Fetal Heart DNase [Search on ENCODE]
GSM1102739 None Epithelium Small Intestine DNase [Search on ENCODE]
GSM1255272 LNCaP Epithelium Prostate DNase [Search on ENCODE]
GSM1255273 LNCaP Epithelium Prostate DNase [Search on ENCODE]
GSM736565 LNCaP Epithelium Prostate DNase [Search on ENCODE]
GSM736603 LNCaP Epithelium Prostate DNase [Search on ENCODE]
ENCSR257BGZ_2 ACHN None Kidney DNase [Search on ENCODE]
ENCSR814KRX_2 HT29 None Colon DNase [Search on ENCODE]
ENCSR228IKB_1 None None Pancreas DNase [Search on ENCODE]
ENCSR228IKB_2 None None Pancreas DNase [Search on ENCODE]
ENCSR522WLH_1 None None Pancreas DNase [Search on ENCODE]
GSM816634 LNCaP Epithelium Prostate DNase [Search on ENCODE]
GSM816637 LNCaP Epithelium Prostate DNase [Search on ENCODE]
GSM822387 LNCaP Epithelium Prostate DNase [Search on ENCODE]
GSM822388 LNCaP Epithelium Prostate DNase [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.