Home
Virus
Gene
Disease
Dataset
Download
Help
 
HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 13723578-13723579 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM770758 AB32 Epithelium Mammary Gland PR [Search on ENCODE]
GSM651557 None CD36 Cell None SMARCA4 [Search on ENCODE]
GSM785493 None Monocyte None H2AZ [Search on ENCODE]
GSM785499 None Macrophage None H2AZ [Search on ENCODE]
GSM1126512 None CD14 cell None H2AZ [Search on ENCODE]
GSM1126514 None CD14 cell None H2AZ [Search on ENCODE]
GSM1126515 None CD14 cell None H2AZ [Search on ENCODE]
GSM749522 NB4 Promyelocytic cell Blood H2AZ [Search on ENCODE]
GSM1003548 None Monocyte Blood H2AZ [Search on ENCODE]
GSM935644 NB4 Promyelocytic cell Blood MAX [Search on ENCODE]
GSM2474870 K562 Leukemia None SIRT1 [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.