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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 167676973-167677130 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM729854 IB4 Lymphocyte Blood RBPJ [Search on ENCODE]
GSM729853 IB4 Lymphocyte Blood RBPJ [Search on ENCODE]
GSM729852 IB4 Lymphocyte Blood SND1 [Search on ENCODE]
GSM729851 IB4 Lymphocyte Blood SND1 [Search on ENCODE]
GSM820431 HeLa Epithelium Cervix TERC [Search on ENCODE]
GSM820438 HeLa Epithelium Cervix TERC [Search on ENCODE]
GSM970258 None Proerythroblast Bone Marrow GATA1 [Search on ENCODE]
GSM486282 GM19099 Lymphoblastoid Blood RELA [Search on ENCODE]
GSM1153765 Mutu III B Lymphocyte None SND1 [Search on ENCODE]
GSM1233911 GM12878 B Lymphocyte Blood STAG1 [Search on ENCODE]
GSM1233953 GM12891 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234197 GM2610 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1234215 GM2630 Lymphoblastoid Blood STAG1 [Search on ENCODE]
GSM1278240 None Proerythroblast Bone Marrow GATA1 [Search on ENCODE]
GSM1003604 GM12878 B Lymphocyte Blood CUX1 [Search on ENCODE]
GSM935431 GM12878 B Lymphocyte Blood MXI1 [Search on ENCODE]
GSM935478 GM12878 B Lymphocyte Blood RELA [Search on ENCODE]
GSM935442 GM12878 B Lymphocyte Blood IKZF1 [Search on ENCODE]
GSM935375 GM12878 B Lymphocyte Blood EBF1 [Search on ENCODE]
GSM935531 GM18951 Lymphoblastoid Blood RELA [Search on ENCODE]
GSM935496 K562 Erythroblast Bone Marrow TAL1 [Search on ENCODE]
GSM803531 GM12878 B Lymphocyte Blood SPI1 [Search on ENCODE]
GSM803389 GM12878 B Lymphocyte Blood TCF12 [Search on ENCODE]
GSM803386 GM12878 B Lymphocyte Blood EBF1 [Search on ENCODE]
GSM803342 GM12878 B Lymphocyte Blood BCL3 [Search on ENCODE]
GSM1010893 GM12878 B Lymphocyte Blood RUNX3 [Search on ENCODE]
GSM803363 GM12878 B Lymphocyte Blood SP1 [Search on ENCODE]
GSM803535 GM12891 Lymphoblastoid Blood YY1 [Search on ENCODE]
GSM803398 GM12891 Lymphoblastoid Blood SPI1 [Search on ENCODE]
GSM803337 GM12891 Lymphoblastoid Blood PAX5 [Search on ENCODE]
GSM1290174 GM12878 B Lymphocyte Blood EP300 [Search on ENCODE]
GSM1290185 GM12878 B Lymphocyte Blood EP300 [Search on ENCODE]
GSM1290186 GM12878 B Lymphocyte Blood EP300 [Search on ENCODE]
GSM1333960 GM12878 B Lymphocyte Blood EP300 [Search on ENCODE]
GSM1333961 GM12878 B Lymphocyte Blood EP300 [Search on ENCODE]
GSM1333962 GM12878 B Lymphocyte Blood EP300 [Search on ENCODE]
GSM1333963 GM12878 B Lymphocyte Blood EP300 [Search on ENCODE]
GSM1333964 GM12878 B Lymphocyte Blood EP300 [Search on ENCODE]
GSM1333965 GM12878 B Lymphocyte Blood EP300 [Search on ENCODE]
GSM1333966 GM12878 B Lymphocyte Blood EP300 [Search on ENCODE]
GSM1333967 GM12878 B Lymphocyte Blood SPI1 [Search on ENCODE]
GSM1334005 GM12878 B Lymphocyte Blood SPI1 [Search on ENCODE]
GSM1334006 GM12878 B Lymphocyte Blood SPI1 [Search on ENCODE]
GSM1334007 GM12878 B Lymphocyte Blood SPI1 [Search on ENCODE]
GSM1334008 GM12878 B Lymphocyte Blood SPI1 [Search on ENCODE]
GSM1370274 OCI-Ly3 B Lymphocyte Bone Marrow IRF4 [Search on ENCODE]
GSM1370276 OCI-Ly3 B Lymphocyte Bone Marrow SPIB [Search on ENCODE]
GSM1370281 OCI-Ly10 B Lymphocyte Bone Marrow SPIB [Search on ENCODE]
GSM486276 GM18505 Lymphoblastoid Blood RELA [Search on ENCODE]
GSM486306 GM18951 Lymphoblastoid Blood RELA [Search on ENCODE]
GSM486308 GM18951 Lymphoblastoid Blood RELA [Search on ENCODE]
GSM486317 GM12878 B Lymphocyte Blood RELA [Search on ENCODE]
GSM486323 GM12891 Lymphoblastoid Blood RELA [Search on ENCODE]
GSM486324 GM12891 Lymphoblastoid Blood RELA [Search on ENCODE]
GSM1703900 None B Lymphocyte None SPI1 [Search on ENCODE]
ENCSR199WXF_1 GM12878 B Lymphocyte Blood EED [Search on ENCODE]
ENCSR199WXF_2 GM12878 B Lymphocyte Blood EED [Search on ENCODE]
ENCSR293QAR_2 GM12878 B Lymphocyte Blood MTA2 [Search on ENCODE]
ENCSR482BBZ_1 HEK293 Epithelium Embryonic Kidney GLIS1 [Search on ENCODE]
ENCSR482BBZ_2 HEK293 Epithelium Embryonic Kidney GLIS1 [Search on ENCODE]
ENCSR739IHN_1 GM12878 B Lymphocyte Blood TBX21 [Search on ENCODE]
ENCSR874AFU_1 GM12878 B Lymphocyte Blood IKZF1 [Search on ENCODE]
ENCSR874AFU_2 GM12878 B Lymphocyte Blood IKZF1 [Search on ENCODE]
GSM2026832 HEK293 Epithelium Embryonic Kidney GLIS1 [Search on ENCODE]
GSM2039170 GM12878 B Lymphocyte Blood EBNA2 [Search on ENCODE]
GSM803406 GM12878 B Lymphocyte Blood YY1 [Search on ENCODE]
GSM1975018 CAL-1 Plasmacytoid dendritic cell None TCF4 [Search on ENCODE]
GSM2386723 None B Lymphocyte Tonsil CREBBP [Search on ENCODE]
GSM2386721 None B Lymphocyte Tonsil CREBBP [Search on ENCODE]
GSM2574798 GM12878 B Lymphocyte Blood TSC22D4 [Search on ENCODE]
GSM2628091 GM12878 Lymphoblastoid None RELB [Search on ENCODE]
GSM2628090 GM12878 Lymphoblastoid None RELB [Search on ENCODE]
GSM2628088 GM12878 Lymphoblastoid None RELA [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.