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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 1613802-1613952 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM1424590 293T-Rex None None SCML2 [Search on ENCODE]
GSM1642762 786-O Epithelium Kidney SPI1 [Search on ENCODE]
GSM1782703 K562 Erythroblast Bone Marrow GATA1 [Search on ENCODE]
GSM1888547 TF-1 Erythroblast Bone Marrow GATA2 [Search on ENCODE]
ENCSR102KIN_2 K562 Erythroblast Bone Marrow ZMYM3 [Search on ENCODE]
ENCSR157TCS_1 K562 Erythroblast Bone Marrow SMARCE1 [Search on ENCODE]
ENCSR277DMR_1 K562 Erythroblast Bone Marrow ETV1 [Search on ENCODE]
ENCSR395HWC_2 K562 Erythroblast Bone Marrow IKZF1 [Search on ENCODE]
ENCSR416QLJ_2 K562 Erythroblast Bone Marrow CEBPB [Search on ENCODE]
ENCSR800QIT_2 HepG2 Epithelium Liver HNF1A [Search on ENCODE]
ENCSR948VFL_1 K562 Erythroblast Bone Marrow IKZF1 [Search on ENCODE]
GSM2026793 HEK293 Epithelium Embryonic Kidney ZNF121 [Search on ENCODE]
GSM2305255 LNCaP None LNCaP cells MYC [Search on ENCODE]
GSM2305254 LNCaP None LNCaP cells MYC [Search on ENCODE]
GSM2305253 LNCaP None LNCaP cells MYC [Search on ENCODE]
GSM2305252 LNCaP None LNCaP cells MYC [Search on ENCODE]
GSM2305251 LNCaP None LNCaP cells MYC [Search on ENCODE]
GSM2574786 K562 Erythroblast Bone Marrow ZMYM3 [Search on ENCODE]
GSM2877105 K562 Erythroblast Bone Marrow GATA1 [Search on ENCODE]
GSM2877121 K562 Erythroblast Bone Marrow GATA1 [Search on ENCODE]
GSM788365 K562 Erythroblast Bone Marrow CEBPA [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.