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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 51517475-51517476 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM785501 None Macrophage None SPI1 [Search on ENCODE]
GSM785495 None Monocyte None SPI1 [Search on ENCODE]
GSM980658 VCaP Epithelium Prostate AR [Search on ENCODE]
GSM848788 BE2-C Neuroblast Brain HOXC9 [Search on ENCODE]
GSM803531 GM12878 B Lymphocyte Blood SPI1 [Search on ENCODE]
GSM803398 GM12891 Lymphoblastoid Blood SPI1 [Search on ENCODE]
GSM1010843 HL-60 Promyeloblast Blood SPI1 [Search on ENCODE]
GSM803384 K562 Erythroblast Bone Marrow SPI1 [Search on ENCODE]
GSM1501166 Kasumi-1 Myeloblast Blood SPI1 [Search on ENCODE]
GSM1501167 Kasumi-1 Myeloblast Blood RUNX1 [Search on ENCODE]
GSM1068136 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM1071280 LNCaP Epithelium Prostate AR [Search on ENCODE]
GSM1421017 None Monocyte None SPI1 [Search on ENCODE]
GSM1421019 None Monocyte None SPI1 [Search on ENCODE]
GSM1557623 TSU-1621-MT None None SPI1 [Search on ENCODE]
GSM1703892 None B Lymphocyte None MEF2B [Search on ENCODE]
GSM1703900 None B Lymphocyte None SPI1 [Search on ENCODE]
GSM1703922 None B Lymphocyte None SPI1 [Search on ENCODE]
GSM1703930 None B Lymphocyte None MEF2B [Search on ENCODE]
GSM1782711 K562 Erythroblast Bone Marrow SPI1 [Search on ENCODE]
GSM1782712 K562 Erythroblast Bone Marrow SPI1 [Search on ENCODE]
GSM1648035 None B Lymphocyte Tonsil KMT2D [Search on ENCODE]
GSM1716768 LHSAR Epithelium Prostate HOXB13 [Search on ENCODE]
GSM1841298 RS4 B Lymphocyte None SPI1 [Search on ENCODE]
GSM1841308 RS4 B Lymphocyte None SPI1 [Search on ENCODE]
GSM1668935 None B Lymphocyte Tonsil FOXO1 [Search on ENCODE]
GSM1668936 None B Lymphocyte Tonsil FOXO1 [Search on ENCODE]
GSM1668937 None B Lymphocyte Tonsil BCL6 [Search on ENCODE]
GSM1668938 None B Lymphocyte Tonsil BCL6 [Search on ENCODE]
GSM1958038 MutuI B Lymphocyte None EBF1 [Search on ENCODE]
ENCSR223TAV_1 HEK293 Epithelium Embryonic Kidney PRDM10 [Search on ENCODE]
ENCSR223TAV_2 HEK293 Epithelium Embryonic Kidney PRDM10 [Search on ENCODE]
GSM2026879 HEK293 Epithelium Embryonic Kidney PRDM6 [Search on ENCODE]
GSM1816090 None Hematopoietic stem and progenitor cell Bone Marrow SPI1 [Search on ENCODE]
GSM1681426 None Macrophage Blood SPI1 [Search on ENCODE]
GSM1681425 None Macrophage Blood SPI1 [Search on ENCODE]
GSM1681424 None Macrophage Blood SPI1 [Search on ENCODE]
GSM1681423 None Macrophage Blood SPI1 [Search on ENCODE]
GSM1976307 Raji B Lymphocyte Blood POLR2A [Search on ENCODE]
GSM2219863 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM2219860 LNCaP Epithelium Prostate FOXA1 [Search on ENCODE]
GSM2386723 None B Lymphocyte Tonsil CREBBP [Search on ENCODE]
GSM2386721 None B Lymphocyte Tonsil CREBBP [Search on ENCODE]
GSM2359987 THP-1 Monocyte Blood SPI1 [Search on ENCODE]
GSM2359986 THP-1 Monocyte Blood SPI1 [Search on ENCODE]
GSM2359985 THP-1 Monocyte Blood SPI1 [Search on ENCODE]
GSM2359984 THP-1 Monocyte Blood SPI1 [Search on ENCODE]
GSM2359983 THP-1 Monocyte Blood SPI1 [Search on ENCODE]
GSM2359982 THP-1 Monocyte Blood SPI1 [Search on ENCODE]
GSM2401447 BJ Fibroblast Skin FOXA2 [Search on ENCODE]
GSM2592808 None Macrophage Blood SPI1 [Search on ENCODE]
GSM722423 U937 None Pleura CEBPA [Search on ENCODE]
GSM2977490 BJ Fibroblast Skin FOXA2 [Search on ENCODE]
GSM920943 Raji B Lymphocyte Blood POLR2A [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.