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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 43844333-43844334 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM640691 H9 Embryonic Stem Cell Embryo EOMES [Search on ENCODE]
GSM1141538 DLD-1 Epithelium Colon REPIN1 [Search on ENCODE]
GSM1208739 LoVo None Colon ETV7 [Search on ENCODE]
GSM1208646 LoVo None Colon MED12 [Search on ENCODE]
GSM1208772 LoVo None Colon MSX1 [Search on ENCODE]
GSM1208594 LoVo None Colon CAMTA2 [Search on ENCODE]
GSM1208654 LoVo None Colon MYC [Search on ENCODE]
GSM1208702 LoVo None Colon ZBTB7B [Search on ENCODE]
GSM1208644 LoVo None Colon LHX2 [Search on ENCODE]
GSM1208668 LoVo None Colon RAD21 [Search on ENCODE]
GSM1208763 LoVo None Colon JUND [Search on ENCODE]
GSM1208671 LoVo None Colon RFX2 [Search on ENCODE]
GSM1208598 LoVo None Colon CEBPB [Search on ENCODE]
GSM1208719 LoVo None Colon CLOCK [Search on ENCODE]
GSM1208678 LoVo None Colon SMC1A [Search on ENCODE]
GSM1208661 LoVo None Colon NIPBL [Search on ENCODE]
GSM1208731 LoVo None Colon E2F8 [Search on ENCODE]
GSM1208679 LoVo None Colon SMC3 [Search on ENCODE]
GSM1208642 LoVo None Colon KLF5 [Search on ENCODE]
GSM934617 LX2 Hepatic Stellate Cell None VDR [Search on ENCODE]
GSM1239448 LoVo None Colon ATF2 [Search on ENCODE]
GSM1239452 LoVo None Colon E2F3 [Search on ENCODE]
GSM1239454 LoVo None Colon ETV5 [Search on ENCODE]
GSM1239465 LoVo None Colon IRF1 [Search on ENCODE]
GSM1239467 LoVo None Colon JUN [Search on ENCODE]
GSM1239538 LoVo None Colon RAD21 [Search on ENCODE]
GSM935553 HeLa-S3 Epithelium Cervix CEBPB [Search on ENCODE]
GSM935519 IMR90 Fibroblast Lung CEBPB [Search on ENCODE]
GSM935499 K562 Erythroblast Bone Marrow CEBPB [Search on ENCODE]
GSM1122669 MDA-MB-231 Epithelium Breast KDM5B [Search on ENCODE]
GSM1477597 SW480 None Colon PROX1 [Search on ENCODE]
GSM838400 C4-2B Epithelium Prostate RUNX2 [Search on ENCODE]
GSM1684636 None Mesenchymal Stem Cell None CEBPB [Search on ENCODE]
GSM1684642 None Mesenchymal Stem Cell None CEBPB [Search on ENCODE]
GSM1684643 None Mesenchymal Stem Cell None CEBPB [Search on ENCODE]
GSM791411 LS180 Epithelium Colon CEBPB [Search on ENCODE]
GSM791412 LS180 Epithelium Colon CEBPB [Search on ENCODE]
GSM791414 LS180 Epithelium Colon CDX2 [Search on ENCODE]
GSM1535701 HCT-116 None Colon HNF4A [Search on ENCODE]
GSM1535702 HCT-116 None Colon HNF4A [Search on ENCODE]
GSM1535709 HCT-116 None Colon HNF4A [Search on ENCODE]
GSM1535710 HCT-116 None Colon HNF4A [Search on ENCODE]
GSM1542532 NCI-H2052 Epithelium Lung YAP1 [Search on ENCODE]
GSM1542533 NCI-H2052 Epithelium Lung YAP1 [Search on ENCODE]
GSM1642761 786-O Epithelium Kidney SPI1 [Search on ENCODE]
GSM1642762 786-O Epithelium Kidney SPI1 [Search on ENCODE]
GSM1642768 786-O Epithelium Kidney SPI1 [Search on ENCODE]
GSM1642769 786-O Epithelium Kidney SPI1 [Search on ENCODE]
GSM1350529 MDA-MB-231 Epithelium Breast NR3C1 [Search on ENCODE]
GSM1700784 MDA-MB-231 Epithelium Breast JUN [Search on ENCODE]
GSM1700786 MDA-MB-231 Epithelium Breast JUN [Search on ENCODE]
GSM1416809 LX2 Hepatic Stellate Cell None BRD4 [Search on ENCODE]
GSM1416810 LX2 Hepatic Stellate Cell None BRD4 [Search on ENCODE]
GSM1901544 HL-60 Promyeloblast Blood JMJD1C [Search on ENCODE]
ENCSR620VIC_1 K562 Erythroblast Bone Marrow CEBPG [Search on ENCODE]
ENCSR620VIC_2 K562 Erythroblast Bone Marrow CEBPG [Search on ENCODE]
ENCSR632DCH_2 K562 Erythroblast Bone Marrow ATF3 [Search on ENCODE]
ENCSR707QWA_1 K562 Erythroblast Bone Marrow NR2F6 [Search on ENCODE]
ENCSR970NKQ_2 K562 Erythroblast Bone Marrow NR2F1 [Search on ENCODE]
GSM1855965 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1856031 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1856030 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1856013 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1856012 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1855971 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1855970 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1855969 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1855968 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM2103042 BEAS-2B Epithelium Lung NR3C1 [Search on ENCODE]
GSM2103041 BEAS-2B Epithelium Lung NR3C1 [Search on ENCODE]
GSM2042905 HT29 colorectal adenocarcinoma None POLR2A [Search on ENCODE]
GSM2042904 HT29 colorectal adenocarcinoma None POLR2A [Search on ENCODE]
GSM2042901 HT29 colorectal adenocarcinoma None POLR2A [Search on ENCODE]
GSM2042899 HT29 colorectal adenocarcinoma None POLR2A [Search on ENCODE]
GSM2042854 HT29 colorectal adenocarcinoma None PPARG [Search on ENCODE]
GSM2042852 HT29 colorectal adenocarcinoma None NR1H3 [Search on ENCODE]
GSM2330584 SUM159PT Mammary carcinoma cell Breast EP300 [Search on ENCODE]
GSM2330568 SUM159PT None Breast CEBPB [Search on ENCODE]
GSM2330566 SUM159PT None Breast CEBPB [Search on ENCODE]
GSM2224583 SNU175 Colorectal cancer cell line None TFAP4 [Search on ENCODE]
GSM2550237 None Progenitor Cells None EP300 [Search on ENCODE]
GSM2817659 H9 Embryonic Stem Cell Embryo GATA3 [Search on ENCODE]
GSM2383939 H460 cells None None NR0B1 [Search on ENCODE]
GSM1964895 MDA-MB-231 Epithelium Breast PRMT5 [Search on ENCODE]
GSM2278002 MDA-MB-231 mDA None STAT3 [Search on ENCODE]
GSM2278003 MDA-MB-231 mDA None STAT3 [Search on ENCODE]
GSM2345027 MV4;11 Leukemia Cell Blood CEBPB [Search on ENCODE]
GSM2371449 THP-1 Monocyte Blood VDR [Search on ENCODE]
GSM2550195 None Progenitor Cells None EP300 [Search on ENCODE]
GSM2293478 786-O Epithelium Kidney EP300 [Search on ENCODE]
GSM2409708 TTC1240 None Malignant rhabdoid tumor SS18 [Search on ENCODE]
GSM2409700 None Embryonic Stem Cell epithelioid sarcoma SMARCB1 [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.