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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 43844333-43844334 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM621418 None Adipocyte Adipose H3K4me1 [Search on ENCODE]
GSM883683 None Epithelium Colon H3K27ac [Search on ENCODE]
GSM1160195 None None Fetal Muscle Trunk H3K36me3 [Search on ENCODE]
GSM1055821 IMR90 Fibroblast Lung H3K36me3 [Search on ENCODE]
GSM1233942 GM12891 Lymphoblastoid Blood H3K36me3 [Search on ENCODE]
GSM1233943 GM12891 Lymphoblastoid Blood H3K36me3 [Search on ENCODE]
GSM733761 None Myoblast Skeletal Muscle H3K4me1 [Search on ENCODE]
GSM733692 K562 Erythroblast Bone Marrow H3K4me1 [Search on ENCODE]
GSM1252324 None None Stomach H3K27ac [Search on ENCODE]
GSM1399017 None Multiple myeloma None H3K36me3 [Search on ENCODE]
GSM1566553 KB Cell Epithelium HeLa contaminant H3K4me1 [Search on ENCODE]
GSM1566555 KB Cell Epithelium HeLa contaminant H3K4me1 [Search on ENCODE]
GSM1316307 CyT49 Embryonic Stem Cell Embryo H3K27ac [Search on ENCODE]
GSM1918420 K562 Erythroblast Bone Marrow H3 [Search on ENCODE]
GSM1918573 K562 Erythroblast Bone Marrow H3K27ac [Search on ENCODE]
GSM1855994 MDA-MB-231 Epithelium Breast H3K27ac [Search on ENCODE]
GSM753426 H1 Embryonic Stem Cell Embryo H3K27ac [Search on ENCODE]
GSM818034 H1 Embryonic Stem Cell Embryo H3K36me3 [Search on ENCODE]
GSM2058045 V703 Colorectal cancer cell line None H3K27ac [Search on ENCODE]
GSM2058041 V457 Colorectal cancer cell line None H3K27ac [Search on ENCODE]
GSM2544239 THP-1 Macrophage None H3K27ac [Search on ENCODE]
GSM2046857 None Mesenchymal Stem Cell Umbilical Cord H3K4me1 [Search on ENCODE]
GSM1816319 None Erythroid progenitor Umbilical Cord H3K4me1 [Search on ENCODE]
GSM2029588 ZR-75-30 None None H3K4me1 [Search on ENCODE]
GSM2067518 MCF-7 None Breast H3K4me1 [Search on ENCODE]
GSM2067516 MCF-7 None Breast H3K4me1 [Search on ENCODE]
GSM1617370 None None Snap-frozen tissue H3K4me2 [Search on ENCODE]
GSM1617360 None None Snap-frozen tissue H3K4me2 [Search on ENCODE]
GSM2058076 V432 None None H3K4me1 [Search on ENCODE]
GSM2058066 V1009 None None H3K4me1 [Search on ENCODE]
GSM2058063 COLO 205 None None H3K4me1 [Search on ENCODE]
GSM2283765 None Colorectal cancer cell line None H3K4me3 [Search on ENCODE]
GSM2712765 HCT-116 None HCT116 H3K4me1 [Search on ENCODE]
GSM2711386 HCT-116 None HCT116 H3K4me1 [Search on ENCODE]
GSM2293330 None None Clear cell renal cell carcinoma tumor H3K27ac [Search on ENCODE]
GSM2711387 HCT-116 None HCT116 H3K4me1 [Search on ENCODE]
GSM874986 None Fibroblast Embryo H3K27me3 [Search on ENCODE]
GSM2723855 None Patient None H3K4me1 [Search on ENCODE]
GSM2476343 SKmel147 melanoma None H3K4me1 [Search on ENCODE]
GSM2550191 None Progenitor Cells None H3K27ac [Search on ENCODE]
GSM2550193 None Progenitor Cells None H3 [Search on ENCODE]
GSM2865070 None None Retina H3K4me1 [Search on ENCODE]
GSM2293321 None None Clear cell renal cell carcinoma tumor H3K4me1 [Search on ENCODE]
GSM875813 LNCaP Epithelium Prostate H3K36me3 [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.