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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 43844333-43844334 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM701531 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM701530 None Epithelium Fetal Small Intestine DNase [Search on ENCODE]
GSM701500 None B Lymphocyte Blood DNase [Search on ENCODE]
GSM701496 None Epithelium Fetal Small Intestine DNase [Search on ENCODE]
GSM701495 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM701490 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM665835 None Epithelium Small Intestine DNase [Search on ENCODE]
GSM665826 None Epithelium Large Intestine DNase [Search on ENCODE]
GSM665825 None Epithelium Small Intestine DNase [Search on ENCODE]
GSM665818 None Epithelium Large Intestine DNase [Search on ENCODE]
GSM1036260 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM817215 H1 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM646564 None Fibroblast Skin DNase [Search on ENCODE]
GSM646565 None Epithelium None DNase [Search on ENCODE]
GSM646560 None Epithelium Amnion DNase [Search on ENCODE]
GSM646561 None Epithelium Mammary Gland DNase [Search on ENCODE]
GSM646563 H7 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM909313 H1 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM909312 None Fibroblast Foreskin DNase [Search on ENCODE]
GSM1027348 None Epithelium Fetal Small Intestine DNase [Search on ENCODE]
GSM1027327 None Epithelium Fetal Small Intestine DNase [Search on ENCODE]
GSM817169 None Fibroblast Foreskin DNase [Search on ENCODE]
GSM817188 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM817170 None Fibroblast Foreskin DNase [Search on ENCODE]
GSM817162 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM817187 None Epithelium Fetal Small Intestine DNase [Search on ENCODE]
GSM817161 None Epithelium Fetal Small Intestine DNase [Search on ENCODE]
GSM817198 H1 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM1014510 None Fibroblast Connective Tissue DNase [Search on ENCODE]
GSM1014514 None Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM1014535 RPMI-7951 Melanoma Cell Skin DNase [Search on ENCODE]
GSM1014524 LHCN-M2 Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM1014515 None Myocyte Heart DNase [Search on ENCODE]
GSM1014517 A549 Epithelium Lung DNase [Search on ENCODE]
GSM1014531 None Embryonic Fibroblast Foreskin DNase [Search on ENCODE]
GSM1014520 None Epithelium None DNase [Search on ENCODE]
GSM1014513 NB4 Promyelocytic cell Blood DNase [Search on ENCODE]
GSM1014538 M059J Glial Cell Brain DNase [Search on ENCODE]
GSM774225 None Epithelium Fetal Small Intestine DNase [Search on ENCODE]
GSM774229 None Epithelium Fetal Small Intestine DNase [Search on ENCODE]
GSM774228 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM774241 None Fibroblast Foreskin DNase [Search on ENCODE]
GSM774233 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM774210 None Epithelium Fetal Small Intestine DNase [Search on ENCODE]
GSM774216 None Epithelium Fetal Small Intestine DNase [Search on ENCODE]
GSM774217 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM774240 None Fibroblast Foreskin DNase [Search on ENCODE]
GSM774213 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM774214 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM774205 None Epithelium Fetal Small Intestine DNase [Search on ENCODE]
GSM849027 None Cortex Kidney DNase [Search on ENCODE]
GSM849028 None Fibroblast Lung DNase [Search on ENCODE]
GSM1102739 None Epithelium Small Intestine DNase [Search on ENCODE]
GSM1338308 None Fibroblast None DNase [Search on ENCODE]
GSM736596 BJ Fibroblast Skin DNase [Search on ENCODE]
GSM736638 H7 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM736606 None Epithelium Amnion DNase [Search on ENCODE]
GSM736631 None Epithelium Amnion DNase [Search on ENCODE]
GSM736554 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM736509 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM736510 HeLa-S3 Epithelium Cervix DNase [Search on ENCODE]
GSM736632 None Fibroblast Periodontal Ligament DNase [Search on ENCODE]
GSM736549 None Cortex Kidney DNase [Search on ENCODE]
GSM736557 None Cortex Kidney DNase [Search on ENCODE]
GSM736560 None Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM736553 None Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM736491 None Fibroblast Connective Tissue DNase [Search on ENCODE]
GSM736534 None Fibroblast Connective Tissue DNase [Search on ENCODE]
GSM1024787 LHCN-M2 Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM1024786 LHCN-M2 Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM1024773 M059J Glial Cell Brain DNase [Search on ENCODE]
GSM1024794 M059J Glial Cell Brain DNase [Search on ENCODE]
GSM1024779 RPMI-7951 Melanoma Cell Skin DNase [Search on ENCODE]
GSM1024793 RPMI-7951 Melanoma Cell Skin DNase [Search on ENCODE]
GSM736543 RPTEC Epithelium Kidney DNase [Search on ENCODE]
GSM736539 RPTEC Epithelium Kidney DNase [Search on ENCODE]
GSM1581831 None Myeloid Cell None DNase [Search on ENCODE]
GSM1855976 MDA-MB-231 Epithelium Breast ATAC-seq [Search on ENCODE]
GSM1855977 MDA-MB-231 Epithelium Breast ATAC-seq [Search on ENCODE]
GSM1855978 MDA-MB-231 Epithelium Breast ATAC-seq [Search on ENCODE]
GSM1855979 MDA-MB-231 Epithelium Breast ATAC-seq [Search on ENCODE]
GSM1855980 MDA-MB-231 Epithelium Breast ATAC-seq [Search on ENCODE]
GSM1855981 MDA-MB-231 Epithelium Breast ATAC-seq [Search on ENCODE]
ENCSR037PGI_1 786-0 None Kidney DNase [Search on ENCODE]
ENCSR037PGI_2 786-0 None Kidney DNase [Search on ENCODE]
ENCSR083STA_1 MG-63 Fibroblast Bone DNase [Search on ENCODE]
ENCSR083STA_2 MG-63 Fibroblast Bone DNase [Search on ENCODE]
ENCSR240TPI_1 BJ Fibroblast Skin DNase [Search on ENCODE]
ENCSR240TPI_2 BJ Fibroblast Skin DNase [Search on ENCODE]
ENCSR364MFN_1 None Hepatocyte None DNase [Search on ENCODE]
ENCSR515EWI_1 Caki-2 None Kidney DNase [Search on ENCODE]
ENCSR548MMD_1 BJ Fibroblast Skin DNase [Search on ENCODE]
ENCSR564JUY_2 None Haematopoietic Progenitor Cell Blood DNase [Search on ENCODE]
ENCSR814KRX_1 HT29 None Colon DNase [Search on ENCODE]
ENCSR932KWJ_2 A-172 Glial Cell Brain DNase [Search on ENCODE]
ENCSR940NLN_1 PC-9 Lung Cancer Cell Lung DNase [Search on ENCODE]
ENCSR000FDI_2 HT1080 None Connective Tissue DNase [Search on ENCODE]
ENCSR000FJH_1 NCI-H460 None None DNase [Search on ENCODE]
ENCSR000FJH_2 NCI-H460 None None DNase [Search on ENCODE]
ENCSR000FJH_3 NCI-H460 None None DNase [Search on ENCODE]
ENCSR217SET_1 SW480 None Colon DNase [Search on ENCODE]
ENCSR503BEM_1 LoVo None Colon DNase [Search on ENCODE]
ENCSR503BEM_2 LoVo None Colon DNase [Search on ENCODE]
ENCSR678ILN_1 None Stem cell None DNase [Search on ENCODE]
ENCSR678ILN_2 None Stem cell None DNase [Search on ENCODE]
ENCSR691MQJ_1 EL None None DNase [Search on ENCODE]
ENCSR691MQJ_2 EL None None DNase [Search on ENCODE]
ENCSR691MQJ_3 EL None None DNase [Search on ENCODE]
ENCSR785BDQ_1 None glomerular visceral epithelial cell None DNase [Search on ENCODE]
ENCSR785BDQ_2 None glomerular visceral epithelial cell None DNase [Search on ENCODE]
ENCSR790FIS_1 None None Colon DNase [Search on ENCODE]
ENCSR979ZJS_1 None None Colon DNase [Search on ENCODE]
GSM1972152 HT1080 None Connective Tissue ATAC-seq [Search on ENCODE]
GSM1972151 HT1080 None Connective Tissue ATAC-seq [Search on ENCODE]
GSM1972149 HT1080 None Connective Tissue ATAC-seq [Search on ENCODE]
GSM1972145 HT1080 None Connective Tissue ATAC-seq [Search on ENCODE]
GSM2224595 SW1116 None None DNase [Search on ENCODE]
GSM2242135 MDA-MB-231 Epithelium Breast DNase [Search on ENCODE]
GSM2242136 MDA-MB-231 Epithelium Breast DNase [Search on ENCODE]
GSM2224593 SK-CO-1 None None DNase [Search on ENCODE]
GSM2224590 HT29 colorectal adenocarcinoma None DNase [Search on ENCODE]
GSM2224597 LoVo None Colon DNase [Search on ENCODE]
GSM2679887 None Monocyte Blood ATAC-seq [Search on ENCODE]
GSM2430672 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.