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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 19430613-19430614 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM460122 LS174T Epithelium Colon TCF4 [Search on ENCODE]
GSM820430 HeLa Epithelium Cervix TERC [Search on ENCODE]
GSM820438 HeLa Epithelium Cervix TERC [Search on ENCODE]
GSM585608 None Hematopoietic Cell None ERG [Search on ENCODE]
GSM1099033 MDA-MB-453 Epithelium Mammary Gland TCF7L2 [Search on ENCODE]
GSM1208763 LoVo None Colon JUND [Search on ENCODE]
GSM1010809 HepG2 Epithelium Liver ZEB1 [Search on ENCODE]
GSM1246715 NCI-H441 Epithelium Lung TTF1 [Search on ENCODE]
GSM1467734 None Embryonic Stem Cell Embryo TRIM28 [Search on ENCODE]
GSM1442006 Jurkat T Lymphocyte Blood MYB [Search on ENCODE]
GSM790211 None Endothelial Cell Umbilical Vein FLI1 [Search on ENCODE]
GSM1701807 None Thymocyte None RAG2 [Search on ENCODE]
ENCSR239ZLZ_2 K562 Erythroblast Bone Marrow FOSL1 [Search on ENCODE]
ENCSR715QNO_1 HEK293 Epithelium Embryonic Kidney ZNF362 [Search on ENCODE]
GSM1856031 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1856030 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1856029 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1855968 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1919987 CFPAC-1 None Pancreatic ductal FOXA1 [Search on ENCODE]
GSM1919986 CFPAC-1 None Pancreatic ductal ELF3 [Search on ENCODE]
GSM1919985 CFPAC-1 None Pancreatic ductal FOXA1 [Search on ENCODE]
GSM1919984 CFPAC-1 None Pancreatic ductal KLF5 [Search on ENCODE]
GSM1574274 CFPAC-1 None Pancreatic ductal FOXA1 [Search on ENCODE]
GSM1574273 CFPAC-1 None Pancreatic ductal ELF3 [Search on ENCODE]
GSM1975020 Gen2.2 Plasmacytoid dendritic cell None TCF4 [Search on ENCODE]
GSM2330604 SUM229 Mammary carcinoma cell Breast BRD4 [Search on ENCODE]
GSM2543157 U2OS None None ZBTB48 [Search on ENCODE]
GSM2543156 U2OS None None ZBTB48 [Search on ENCODE]
GSM2574779 HepG2 Epithelium Liver NFIA [Search on ENCODE]
GSM2398967 None Macrophage None SP140 [Search on ENCODE]
GSM2398965 None Macrophage None SP140 [Search on ENCODE]
GSM2746540 SW480 None Colon TP53 [Search on ENCODE]
GSM2902642 HepG2 Epithelium Liver NFIC [Search on ENCODE]
GSM2436677 A673 Polygonal Muscle FLI1 [Search on ENCODE]
GSM2702724 HCT-116 None Colon H2AZ [Search on ENCODE]
GSM2360622 MDA-231 Epithelium Mammary Gland ZEB1 [Search on ENCODE]
GSM2550258 None Fibroblast None EP300 [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.