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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 19430613-19430614 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM701537 None T Lymphocyte Fetal Thymus DNase [Search on ENCODE]
GSM701513 None T Lymphocyte Fetal Thymus DNase [Search on ENCODE]
GSM665823 None T Lymphocyte Fetal Thymus DNase [Search on ENCODE]
GSM878656 None None Fetal Thymus DNase [Search on ENCODE]
GSM878657 None None Fetal Thymus DNase [Search on ENCODE]
GSM1027313 None None Fetal Thymus DNase [Search on ENCODE]
GSM817172 None None Fetal Thymus DNase [Search on ENCODE]
GSM1009639 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM1014532 None Endothelial Cell Blood DNase [Search on ENCODE]
GSM1014538 M059J Glial Cell Brain DNase [Search on ENCODE]
GSM774230 None None Fetal Thymus DNase [Search on ENCODE]
GSM1224666 HCT-116 None Colon DNase [Search on ENCODE]
GSM1855976 MDA-MB-231 Epithelium Breast ATAC-seq [Search on ENCODE]
GSM1855978 MDA-MB-231 Epithelium Breast ATAC-seq [Search on ENCODE]
GSM1855979 MDA-MB-231 Epithelium Breast ATAC-seq [Search on ENCODE]
GSM1855980 MDA-MB-231 Epithelium Breast ATAC-seq [Search on ENCODE]
GSM1855981 MDA-MB-231 Epithelium Breast ATAC-seq [Search on ENCODE]
ENCSR814KRX_2 HT29 None Colon DNase [Search on ENCODE]
ENCSR489NAM_2 OCI-Ly7 B cell lymphoma Blood DNase [Search on ENCODE]
ENCSR000FDI_2 HT1080 None Connective Tissue DNase [Search on ENCODE]
ENCSR217SET_2 SW480 None Colon DNase [Search on ENCODE]
GSM1972151 HT1080 None Connective Tissue ATAC-seq [Search on ENCODE]
GSM1972149 HT1080 None Connective Tissue ATAC-seq [Search on ENCODE]
GSM1972148 HT1080 None Connective Tissue ATAC-seq [Search on ENCODE]
GSM2243039 None Plasmacytoid dendritic cell None ATAC-seq [Search on ENCODE]
GSM2243037 None Plasmacytoid dendritic cell None ATAC-seq [Search on ENCODE]
GSM2241147 T47D Epithelium Mammary Gland ATAC-seq [Search on ENCODE]
GSM1946442 hFOB Embryonic Stem Cell Bone DNase [Search on ENCODE]
GSM1946441 hFOB Embryonic Stem Cell Bone DNase [Search on ENCODE]
GSM1946440 hFOB Embryonic Stem Cell Bone DNase [Search on ENCODE]
GSM2224589 GP5d None Colon DNase [Search on ENCODE]
GSM2224594 SW480 None Colon DNase [Search on ENCODE]
GSM2476338 None Melanocyte Foreskin ATAC-seq [Search on ENCODE]
GSM2692575 PC-9 Lung Cancer Cell Lung ATAC-seq [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.