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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 155678067-155678068 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM503905 LNCaP Epithelium Prostate H3K4me2 [Search on ENCODE]
GSM986084 MCF-7 Epithelium Breast H3K4me1 [Search on ENCODE]
GSM986081 MCF-7 Epithelium Breast H3K4me1 [Search on ENCODE]
GSM621421 None None Duodenum Mucosa H3K36me3 [Search on ENCODE]
GSM621419 None Mesenchymal Stem Cell Bone Marrow H3K36me3 [Search on ENCODE]
GSM1145323 LNCaP Epithelium Prostate H3K4me1 [Search on ENCODE]
GSM1233943 GM12891 Lymphoblastoid Blood H3K36me3 [Search on ENCODE]
GSM1234170 GM2588 Lymphoblastoid Blood H3K36me3 [Search on ENCODE]
GSM1234188 GM2610 Lymphoblastoid Blood H3K36me3 [Search on ENCODE]
GSM1249447 LNCaP Epithelium Prostate H3K27ac [Search on ENCODE]
GSM1249448 LNCaP Epithelium Prostate H3K27ac [Search on ENCODE]
GSM945315 H7 Embryonic Stem Cell Embryo H3K36me3 [Search on ENCODE]
GSM945324 H7 Embryonic Stem Cell Embryo H3K36me3 [Search on ENCODE]
GSM1003562 None Monocyte Blood H3K36me3 [Search on ENCODE]
GSM1922394 IMR90 Fibroblast Lung H3K36me3 [Search on ENCODE]
GSM772751 HUES64 Embryonic Stem Cell Embryo H3K36me3 [Search on ENCODE]
GSM772763 None Mesenchymal Stem Cell Adipose H3K36me3 [Search on ENCODE]
GSM772798 HUES48 Embryonic Stem Cell Embryo H3K36me3 [Search on ENCODE]
GSM772820 None Mesenchymal Stem Cell Adipose H3K36me3 [Search on ENCODE]
GSM1907214 LNCaP Epithelium Prostate H3K27ac [Search on ENCODE]
GSM1907213 LNCaP Epithelium Prostate H3K27ac [Search on ENCODE]
GSM2042909 HT29 colorectal adenocarcinoma None H3K36me3 [Search on ENCODE]
GSM2058077 V456 None None H3K4me1 [Search on ENCODE]
GSM2058076 V432 None None H3K4me1 [Search on ENCODE]
GSM1907209 LNCaP Epithelium Prostate H3K4me1 [Search on ENCODE]
GSM2258764 MB361 None Breast H3K4me1 [Search on ENCODE]
GSM773027 None iPSC None H3K36me3 [Search on ENCODE]
GSM2277154 LNCaP Epithelium Prostate H3K4me1 [Search on ENCODE]
GSM466737 H1 Embryonic Stem Cell Embryo H3K36me3 [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.