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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 25629777-25629928 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM320734 HeLa-S3 Epithelium Cervix POLR2A [Search on ENCODE]
GSM1024800 MCF-7 Epithelium Breast ARNT [Search on ENCODE]
GSM986065 MCF-7 Epithelium Breast FOXA1 [Search on ENCODE]
GSM986069 MCF-7 Epithelium Breast GATA3 [Search on ENCODE]
GSM986067 MCF-7 Epithelium Breast GATA3 [Search on ENCODE]
GSM1058990 HeLa Epithelium Cervix MAX [Search on ENCODE]
GSM1208763 LoVo None Colon JUND [Search on ENCODE]
GSM1241752 MCF-7 Epithelium Breast GATA3 [Search on ENCODE]
GSM1241756 MCF-7 Epithelium Breast GATA3 [Search on ENCODE]
GSM935500 HeLa-S3 Epithelium Cervix EP300 [Search on ENCODE]
GSM935560 HeLa-S3 Epithelium Cervix RFX5 [Search on ENCODE]
GSM935395 HeLa-S3 Epithelium Cervix POLR2A [Search on ENCODE]
GSM935328 HeLa-S3 Epithelium Cervix JUND [Search on ENCODE]
GSM935341 HeLa-S3 Epithelium Cervix JUN [Search on ENCODE]
GSM935318 HeLa-S3 Epithelium Cervix MAX [Search on ENCODE]
GSM935553 HeLa-S3 Epithelium Cervix CEBPB [Search on ENCODE]
GSM935276 HeLa-S3 Epithelium Cervix STAT3 [Search on ENCODE]
GSM935317 HeLa-S3 Epithelium Cervix FOS [Search on ENCODE]
GSM803533 HeLa-S3 Epithelium Cervix POLR2A [Search on ENCODE]
GSM1010783 MCF-7 Epithelium Breast GATA3 [Search on ENCODE]
GSM1010768 MCF-7 Epithelium Breast FOSL2 [Search on ENCODE]
GSM1010862 MCF-7 Epithelium Breast SIN3A [Search on ENCODE]
GSM1010880 SK-N-SH Neuroblastoma cell Brain NFIC [Search on ENCODE]
GSM1010840 SK-N-SH Neuroblastoma cell Brain FOSL2 [Search on ENCODE]
GSM1010858 SK-N-SH Neuroblastoma cell Brain TEAD4 [Search on ENCODE]
GSM1010901 SK-N-SH Neuroblastoma cell Brain JUND [Search on ENCODE]
GSM1010834 SK-N-SH Neuroblastoma cell Brain MEF2A [Search on ENCODE]
GSM1010763 SK-N-SH Neuroblastoma cell Brain EP300 [Search on ENCODE]
GSM1010887 SK-N-SH Neuroblastoma cell Brain PBX3 [Search on ENCODE]
GSM1010738 SK-N-SH Neuroblastoma cell Brain GATA3 [Search on ENCODE]
GSM1010900 SK-N-SH Neuroblastoma cell Brain TCF12 [Search on ENCODE]
GSM1088665 HeLa Epithelium Cervix POLR2A [Search on ENCODE]
GSM1125261 BT-549 Epithelium Mammary Gland FOSL1 [Search on ENCODE]
GSM1125262 BT-549 Epithelium Mammary Gland JUN [Search on ENCODE]
GSM1192073 HEK293 Epithelium Embryonic Kidney POLR2A [Search on ENCODE]
GSM1192076 HEK293 Epithelium Embryonic Kidney POLR2A [Search on ENCODE]
GSM1405112 HeLa Epithelium Cervix POLR2A [Search on ENCODE]
GSM1405113 HeLa Epithelium Cervix POLR2A [Search on ENCODE]
GSM1405115 HeLa Epithelium Cervix POLR2A [Search on ENCODE]
GSM1405117 HeLa Epithelium Cervix POLR2A [Search on ENCODE]
GSM1482885 HeLa Epithelium Cervix POLR2A [Search on ENCODE]
GSM1482889 HeLa Epithelium Cervix POLR2A [Search on ENCODE]
GSM1482891 HeLa Epithelium Cervix POLR2A [Search on ENCODE]
GSM1494444 HeLa Epithelium Cervix POLR2A [Search on ENCODE]
GSM1494445 HeLa Epithelium Cervix POLR2A [Search on ENCODE]
GSM1494446 HeLa Epithelium Cervix CDK9 [Search on ENCODE]
GSM1494447 HeLa Epithelium Cervix CDK9 [Search on ENCODE]
GSM1647184 HEK293A None None MEF2B [Search on ENCODE]
GSM1647185 HEK293A None None MEF2B [Search on ENCODE]
GSM1647188 HEK293A None None MEF2B [Search on ENCODE]
GSM1684630 None Mesenchymal Stem Cell None POLR2A [Search on ENCODE]
GSM1619040 NCI-H526 Epithelium Lung KDM1A [Search on ENCODE]
GSM1670875 HeLa Epithelium Cervix NELFA [Search on ENCODE]
GSM1846797 HeLa Epithelium Cervix POLR2A [Search on ENCODE]
ENCSR219MKK_1 HeLa-S3 Epithelium Cervix DEK [Search on ENCODE]
ENCSR239ZLZ_1 K562 Erythroblast Bone Marrow FOSL1 [Search on ENCODE]
ENCSR239ZLZ_2 K562 Erythroblast Bone Marrow FOSL1 [Search on ENCODE]
ENCSR423RTK_1 MCF-7 Epithelium Breast GATA3 [Search on ENCODE]
ENCSR423RTK_2 MCF-7 Epithelium Breast GATA3 [Search on ENCODE]
ENCSR632DCH_2 K562 Erythroblast Bone Marrow ATF3 [Search on ENCODE]
ENCSR874AFU_2 GM12878 B Lymphocyte Blood IKZF1 [Search on ENCODE]
GSM1855965 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1856032 MDA-MB-231 Epithelium Mammary Gland SMARCA4 [Search on ENCODE]
GSM1856031 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1856030 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1856029 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1856013 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1856012 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1855971 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1855970 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1855969 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1855968 MDA-MB-231 Epithelium Mammary Gland GATA3 [Search on ENCODE]
GSM1858629 MCF-7 Epithelium Breast FOXA1 [Search on ENCODE]
GSM1858627 MCF-7 Epithelium Breast FOXA1 [Search on ENCODE]
GSM1858626 MCF-7 Epithelium Breast FOXA1 [Search on ENCODE]
GSM2359455 PC-9 Lung Cancer Cell Lung BRD4 [Search on ENCODE]
GSM2359451 PC-9 Lung Cancer Cell Lung BRD4 [Search on ENCODE]
GSM2802949 hMSC-TERT4 None None MED1 [Search on ENCODE]
GSM2642508 HeLa Epithelium Cervix POLR2A [Search on ENCODE]
GSM2642500 HeLa Epithelium Cervix POLR2A [Search on ENCODE]
GSM2642501 HeLa Epithelium Cervix POLR2A [Search on ENCODE]
GSM2642503 HeLa Epithelium Cervix POLR2A [Search on ENCODE]
GSM2642504 HeLa Epithelium Cervix POLR2A [Search on ENCODE]
GSM2642505 HeLa Epithelium Cervix POLR2A [Search on ENCODE]
GSM2642506 HeLa Epithelium Cervix POLR2A [Search on ENCODE]
GSM2642507 HeLa Epithelium Cervix POLR2A [Search on ENCODE]
GSM2409676 TTC1240 None Malignant rhabdoid tumor SMARCB1 [Search on ENCODE]
GSM722414 K562 Erythroblast Bone Marrow GATA2 [Search on ENCODE]
GSM2642493 HeLa Epithelium Cervix POLR2A [Search on ENCODE]
GSM2409664 G-401 None Malignant rhabdoid tumor SMARCB1 [Search on ENCODE]
GSM2409665 G-401 None Malignant rhabdoid tumor SMARCC1 [Search on ENCODE]
GSM2550259 None Fibroblast None POLR2A [Search on ENCODE]
GSM2409708 TTC1240 None Malignant rhabdoid tumor SS18 [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.