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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 25629777-25629928 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM530665 IMR90 Fibroblast Lung DNase [Search on ENCODE]
GSM646565 None Epithelium None DNase [Search on ENCODE]
GSM931362 WI-38 Fibroblast Lung DNase [Search on ENCODE]
GSM878623 None Fibroblast Fetal Skin Back DNase [Search on ENCODE]
GSM1014535 RPMI-7951 Melanoma Cell Skin DNase [Search on ENCODE]
GSM1014520 None Epithelium None DNase [Search on ENCODE]
GSM1014538 M059J Glial Cell Brain DNase [Search on ENCODE]
GSM723024 IMR90 Fibroblast Lung DNase [Search on ENCODE]
GSM849026 None Astrocyte Brain DNase [Search on ENCODE]
GSM1220605 None Fibroblast Fetal Skin Back DNase [Search on ENCODE]
GSM1220606 None Fibroblast Fetal Skin Scalp DNase [Search on ENCODE]
GSM1220608 None None Fetal Skin Upper Back DNase [Search on ENCODE]
GSM1220609 None None Fetal Skin Biceps Right DNase [Search on ENCODE]
GSM1338307 None Fibroblast None DNase [Search on ENCODE]
GSM1338308 None Fibroblast None DNase [Search on ENCODE]
GSM736554 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM736509 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM736510 HeLa-S3 Epithelium Cervix DNase [Search on ENCODE]
GSM736564 HeLa-S3 Epithelium Cervix DNase [Search on ENCODE]
GSM1024773 M059J Glial Cell Brain DNase [Search on ENCODE]
GSM1024794 M059J Glial Cell Brain DNase [Search on ENCODE]
GSM1024783 MCF-7 Epithelium Breast DNase [Search on ENCODE]
GSM1024779 RPMI-7951 Melanoma Cell Skin DNase [Search on ENCODE]
GSM736613 WI-38 Fibroblast Lung DNase [Search on ENCODE]
GSM763533 HeLa Epithelium Cervix DNase [Search on ENCODE]
GSM1855979 MDA-MB-231 Epithelium Breast ATAC-seq [Search on ENCODE]
GSM1855980 MDA-MB-231 Epithelium Breast ATAC-seq [Search on ENCODE]
GSM1855981 MDA-MB-231 Epithelium Breast ATAC-seq [Search on ENCODE]
ENCSR240TPI_1 BJ Fibroblast Skin DNase [Search on ENCODE]
ENCSR240TPI_2 BJ Fibroblast Skin DNase [Search on ENCODE]
ENCSR548MMD_1 BJ Fibroblast Skin DNase [Search on ENCODE]
ENCSR548MMD_2 BJ Fibroblast Skin DNase [Search on ENCODE]
ENCSR940NLN_1 PC-9 Lung Cancer Cell Lung DNase [Search on ENCODE]
ENCSR940NLN_2 PC-9 Lung Cancer Cell Lung DNase [Search on ENCODE]
ENCSR000FFJ SJCRH30 Fibroblast Muscle DNase [Search on ENCODE]
GSM2241148 T47D Epithelium Mammary Gland ATAC-seq [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.