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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 101151001-101151002 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM521900 IMR90 Fibroblast Lung H3K4me2 [Search on ENCODE]
GSM945520 None Endothelial Cell Umbilical Vein H3K27ac [Search on ENCODE]
GSM945521 None Endothelial Cell Umbilical Vein H3K27ac [Search on ENCODE]
GSM646423 None Endothelial Cell Umbilical Vein H3K4me2 [Search on ENCODE]
GSM646414 None Endothelial Cell Umbilical Vein H3K27ac [Search on ENCODE]
GSM646465 NHEK Keratinocyte Skin H3K4me2 [Search on ENCODE]
GSM873694 IMR90 Fibroblast Lung H3 [Search on ENCODE]
GSM646383 None Epithelium Mammary Gland H3K4me2 [Search on ENCODE]
GSM537706 None Hepatocyte Liver H3K4me1 [Search on ENCODE]
GSM575222 Caco-2 Epithelium Colon H3K4me2 [Search on ENCODE]
GSM1120351 None None Spleen H3K4me1 [Search on ENCODE]
GSM809015 None Endothelial Cell Umbilical Vein H3K27ac [Search on ENCODE]
GSM1009626 None Endothelial Cell Umbilical Vein H3K27ac [Search on ENCODE]
GSM1009625 None Endothelial Cell Umbilical Vein H3K27ac [Search on ENCODE]
GSM1112809 None Epithelium Liver H3K27ac [Search on ENCODE]
GSM908951 None None Left Ventricle H3K27ac [Search on ENCODE]
GSM669925 None Adipocyte Adipose H3K4me3 [Search on ENCODE]
GSM732910 CUTLL1 T Lymphocyte Blood H3K4me1 [Search on ENCODE]
GSM883654 None Epithelium Colon H3K4me1 [Search on ENCODE]
GSM1154045 None Endothelial Cell Umbilical Vein H3K27ac [Search on ENCODE]
GSM1154046 None Endothelial Cell Umbilical Vein H3K27ac [Search on ENCODE]
GSM1214674 None Endothelial Cell Umbilical Vein H3K27ac [Search on ENCODE]
GSM1214675 None Endothelial Cell Umbilical Vein H3K27ac [Search on ENCODE]
GSM1214676 None Endothelial Cell Umbilical Vein H3K27ac [Search on ENCODE]
GSM1214677 None Endothelial Cell Umbilical Vein H3K27ac [Search on ENCODE]
GSM1226370 None Endothelial Cell Umbilical Vein H3K27ac [Search on ENCODE]
GSM1226371 None Endothelial Cell Umbilical Vein H3K27ac [Search on ENCODE]
GSM733654 None Epithelium Mammary Gland H3K4me2 [Search on ENCODE]
GSM733691 None Endothelial Cell Umbilical Vein H3K27ac [Search on ENCODE]
GSM733683 None Endothelial Cell Umbilical Vein H3K4me2 [Search on ENCODE]
GSM733686 NHEK Keratinocyte Skin H3K4me2 [Search on ENCODE]
GSM1273490 None Endothelial Cell Artery H3K4me2 [Search on ENCODE]
GSM1526934 IMR90 Fibroblast Lung H3K4me2 [Search on ENCODE]
GSM1526935 IMR90 Fibroblast Lung H3K4me2 [Search on ENCODE]
GSM1566553 KB Cell Epithelium HeLa contaminant H3K4me1 [Search on ENCODE]
GSM1566556 KB Cell Epithelium HeLa contaminant H3K4me1 [Search on ENCODE]
GSM1420160 DKO1 Colon cancer cell Colon H3K4me1 [Search on ENCODE]
GSM1663021 FT246 Epithelium Fallopian tube secretory H3K4me1 [Search on ENCODE]
ENCSR769FOC_1 PC-9 Lung Cancer Cell Lung H3K27ac [Search on ENCODE]
GSM1835844 None None Kidney H3K27ac [Search on ENCODE]
GSM2467313 None None endometrioid adenocarcinoma H3K27ac [Search on ENCODE]
GSM2572314 None Keratinocyte Foreskin H3K27ac [Search on ENCODE]
GSM1855986 MDA-MB-231 Epithelium Mammary Gland H3K4me1 [Search on ENCODE]
GSM1574254 PT45-P1 None Pancreatic ductal H3K4me1 [Search on ENCODE]
GSM1574245 CFPAC-1 None Pancreatic ductal H3K4me1 [Search on ENCODE]
GSM1574242 Capan-1 None Pancreatic ductal H3K4me1 [Search on ENCODE]
GSM1709279 U2OS None Bone H3K56ac [Search on ENCODE]
GSM1709278 U2OS None Bone H3K56ac [Search on ENCODE]
GSM1846886 None Patient derived xenograft cells None H3K4me1 [Search on ENCODE]
GSM2187239 DU145 Epithelium Prostate H3K4me1 [Search on ENCODE]
GSM2187238 DU145 Epithelium Prostate H3K4me1 [Search on ENCODE]
GSM2067519 MCF-7 None Breast H3K4me1 [Search on ENCODE]
GSM2442786 None Endothelial Cell Umbilical Vein H3K4me2 [Search on ENCODE]
GSM2360947 Huh7 Epithelium Liver H3K4me1 [Search on ENCODE]
GSM2360945 Huh7 None None H3K4me1 [Search on ENCODE]
GSM2550212 None Fibroblast None H3K27ac [Search on ENCODE]
GSM2550233 None Progenitor Cells None H3K27ac [Search on ENCODE]
GSM2644048 D1 ORL UVA Hepatocyte None H3K4me1 [Search on ENCODE]
GSM2711386 HCT-116 None HCT116 H3K4me1 [Search on ENCODE]
GSM2394410 JHU-06 Endothelial Cell None H3K4me2 [Search on ENCODE]
GSM2394411 JHU-06 Endothelial Cell None H3K4me2 [Search on ENCODE]
GSM2550240 None Endothelial Cell None H3K27ac [Search on ENCODE]
GSM2550243 None Endothelial Cell None H3K4me3 [Search on ENCODE]
GSM2550201 None Endothelial Cell None H3K4me3 [Search on ENCODE]
GSM1914986 HOS Osteosarcoma cell None H3K4me1 [Search on ENCODE]
GSM2711385 HCT-116 None HCT116 H3K4me1 [Search on ENCODE]
GSM2258710 MCF-10A Epithelium Breast H3K4me1 [Search on ENCODE]
GSM2309431 MDA-MB-231 mDA None H3K4me1 [Search on ENCODE]
GSM2644051 None Hepatocyte None H3K4me1 [Search on ENCODE]
GSM2644054 None Hepatocyte None H3K4me1 [Search on ENCODE]
GSM2550191 None Progenitor Cells None H3K27ac [Search on ENCODE]
GSM2550198 None Endothelial Cell None H3K27ac [Search on ENCODE]
GSM2809622 HCT-116 None Colon H3K4me1 [Search on ENCODE]
GSM2809621 HCT-116 None Colon H3K4me1 [Search on ENCODE]
GSM2571032 HCT-116 None HCT116 H3K4me1 [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.