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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 101151001-101151002 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM701531 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM701530 None Epithelium Fetal Small Intestine DNase [Search on ENCODE]
GSM701500 None B Lymphocyte Blood DNase [Search on ENCODE]
GSM701495 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM701490 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM701487 None Epithelium Fetal Small Intestine DNase [Search on ENCODE]
GSM665835 None Epithelium Small Intestine DNase [Search on ENCODE]
GSM665826 None Epithelium Large Intestine DNase [Search on ENCODE]
GSM665818 None Epithelium Large Intestine DNase [Search on ENCODE]
GSM623517 NHEK Keratinocyte Skin DNase [Search on ENCODE]
GSM1036260 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM1024609 None Epithelium Mammary Gland DNase [Search on ENCODE]
GSM817215 H1 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM817219 None Epithelium Fetal Placenta DNase [Search on ENCODE]
GSM1059535 None Epithelium Fetal Placenta DNase [Search on ENCODE]
GSM646560 None Epithelium Amnion DNase [Search on ENCODE]
GSM646570 None Endothelial Cell Blood DNase [Search on ENCODE]
GSM909313 H1 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM878647 None None Fetal Skin Quadriceps Right DNase [Search on ENCODE]
GSM906382 H1 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM1027350 None Keratinocyte Foreskin DNase [Search on ENCODE]
GSM1027348 None Epithelium Fetal Small Intestine DNase [Search on ENCODE]
GSM817195 None Keratinocyte Foreskin DNase [Search on ENCODE]
GSM817194 None Keratinocyte Foreskin DNase [Search on ENCODE]
GSM817197 None Keratinocyte Foreskin DNase [Search on ENCODE]
GSM817196 None Keratinocyte Foreskin DNase [Search on ENCODE]
GSM817162 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM817187 None Epithelium Fetal Small Intestine DNase [Search on ENCODE]
GSM817161 None Epithelium Fetal Small Intestine DNase [Search on ENCODE]
GSM1014514 None Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM1014528 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM1014518 None Embryonic Fibroblast Heart DNase [Search on ENCODE]
GSM1014532 None Endothelial Cell Blood DNase [Search on ENCODE]
GSM1014511 None Epithelium Esophagus DNase [Search on ENCODE]
GSM1014519 None Endothelial Cell Blood DNase [Search on ENCODE]
GSM1014520 None Epithelium None DNase [Search on ENCODE]
GSM1014538 M059J Glial Cell Brain DNase [Search on ENCODE]
GSM723024 IMR90 Fibroblast Lung DNase [Search on ENCODE]
GSM774219 None Epithelium Fetal Placenta DNase [Search on ENCODE]
GSM774225 None Epithelium Fetal Small Intestine DNase [Search on ENCODE]
GSM774215 None Epithelium Fetal Placenta DNase [Search on ENCODE]
GSM774228 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM774210 None Epithelium Fetal Small Intestine DNase [Search on ENCODE]
GSM774217 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM774213 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM774214 None Epithelium Fetal Large Intestine DNase [Search on ENCODE]
GSM849025 None Epithelium Lung DNase [Search on ENCODE]
GSM849027 None Cortex Kidney DNase [Search on ENCODE]
GSM1220609 None None Fetal Skin Biceps Right DNase [Search on ENCODE]
GSM1224667 HCT-116 None Colon DNase [Search on ENCODE]
GSM736631 None Epithelium Amnion DNase [Search on ENCODE]
GSM736494 None Embryonic Fibroblast Heart DNase [Search on ENCODE]
GSM736532 None Epithelium Esophagus DNase [Search on ENCODE]
GSM736564 HeLa-S3 Epithelium Cervix DNase [Search on ENCODE]
GSM736521 None Endothelial Cell Umbilical Vein DNase [Search on ENCODE]
GSM736618 None Endothelial Cell Kidney DNase [Search on ENCODE]
GSM1024773 M059J Glial Cell Brain DNase [Search on ENCODE]
GSM736545 NHEK Keratinocyte Skin DNase [Search on ENCODE]
GSM736539 RPTEC Epithelium Kidney DNase [Search on ENCODE]
GSM736608 SAEC Epithelium Lung DNase [Search on ENCODE]
GSM763533 HeLa Epithelium Cervix DNase [Search on ENCODE]
GSM1645709 None Keratinocyte None ATAC-seq [Search on ENCODE]
GSM2035768 NHEK Keratinocyte Skin ATAC-seq [Search on ENCODE]
GSM1662261 None Fibroblast None ATAC-seq [Search on ENCODE]
GSM1855979 MDA-MB-231 Epithelium Breast ATAC-seq [Search on ENCODE]
GSM1855980 MDA-MB-231 Epithelium Breast ATAC-seq [Search on ENCODE]
GSM1855981 MDA-MB-231 Epithelium Breast ATAC-seq [Search on ENCODE]
ENCSR037PGI_2 786-0 None Kidney DNase [Search on ENCODE]
ENCSR240TPI_1 BJ Fibroblast Skin DNase [Search on ENCODE]
ENCSR564JUY_1 None Haematopoietic Progenitor Cell Blood DNase [Search on ENCODE]
ENCSR564JUY_2 None Haematopoietic Progenitor Cell Blood DNase [Search on ENCODE]
ENCSR620WAR_2 SJSA-1 Fibroblast Bone DNase [Search on ENCODE]
ENCSR940NLN_1 PC-9 Lung Cancer Cell Lung DNase [Search on ENCODE]
ENCSR000FDI_2 HT1080 None Connective Tissue DNase [Search on ENCODE]
ENCSR121ZSL_1 None Trophoblast cell None DNase [Search on ENCODE]
ENCSR217SET_1 SW480 None Colon DNase [Search on ENCODE]
ENCSR593LTJ_1 None Trophoblast cell None DNase [Search on ENCODE]
ENCSR593LTJ_2 None Trophoblast cell None DNase [Search on ENCODE]
ENCSR691MQJ_3 EL None None DNase [Search on ENCODE]
ENCSR809LCE_1 None Trophoblast cell None DNase [Search on ENCODE]
ENCSR964MZQ_1 None Trophoblast cell None DNase [Search on ENCODE]
GSM1972149 HT1080 None Connective Tissue ATAC-seq [Search on ENCODE]
GSM2174882 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2174880 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2174879 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2174878 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM816635 NHEK Keratinocyte Skin DNase [Search on ENCODE]
GSM2242135 MDA-MB-231 Epithelium Breast DNase [Search on ENCODE]
GSM2242136 MDA-MB-231 Epithelium Breast DNase [Search on ENCODE]
GSM1876024 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM1876027 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM2692559 PC-9 Lung Cancer Cell Lung ATAC-seq [Search on ENCODE]
GSM1904731 PC-9 Lung Cancer Cell Lung ATAC-seq [Search on ENCODE]
GSM1904730 PC-9 Lung Cancer Cell Lung ATAC-seq [Search on ENCODE]
GSM2692563 PC-9 Lung Cancer Cell Lung ATAC-seq [Search on ENCODE]
GSM2692562 PC-9 Lung Cancer Cell Lung ATAC-seq [Search on ENCODE]
GSM2692560 PC-9 Lung Cancer Cell Lung ATAC-seq [Search on ENCODE]
GSM1904729 PC-9 Lung Cancer Cell Lung ATAC-seq [Search on ENCODE]
GSM2898842 None Cardiomyocyte None ATAC-seq [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.