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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 198606222-198606223 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM929090 IMR90 Fibroblast Lung EP300 [Search on ENCODE]
GSM902779 None Neural crest cell Cranial TFAP2A [Search on ENCODE]
GSM1122323 U937 None Pleura MYH11 [Search on ENCODE]
GSM1011562 A375 None Skin TFAP2C [Search on ENCODE]
GSM1055812 IMR90 Fibroblast Lung EP300 [Search on ENCODE]
GSM1257396 None Stromal Cell None NR2F2 [Search on ENCODE]
GSM1366686 None Keratinocyte Foreskin TP63 [Search on ENCODE]
GSM803473 K562 Erythroblast Bone Marrow ZBTB7A [Search on ENCODE]
GSM803409 T47D Epithelium Mammary Gland FOXA1 [Search on ENCODE]
GSM1122671 HCC2157 Epithelium Mammary Gland KDM5B [Search on ENCODE]
GSM1125262 BT-549 Epithelium Mammary Gland JUN [Search on ENCODE]
GSM1348337 BJ Fibroblast Skin KDM6B [Search on ENCODE]
GSM1348338 BJ Fibroblast Skin KDM6B [Search on ENCODE]
GSM1387027 None Keratinocyte Foreskin ZNF750 [Search on ENCODE]
GSM538930 None Keratinocyte Skin TP63 [Search on ENCODE]
GSM1446928 None Keratinocyte None TP63 [Search on ENCODE]
GSM1703607 None Stromal Cell Endometrium FOXO1 [Search on ENCODE]
GSM1817181 None Neural crest cell Cranial EP300 [Search on ENCODE]
GSM1817182 None Neural crest cell Cranial EP300 [Search on ENCODE]
GSM1817183 None Neural crest cell Cranial EP300 [Search on ENCODE]
GSM1817190 None Neural crest cell Cranial NR2F1 [Search on ENCODE]
GSM1817193 None Neural crest cell Cranial NR2F1 [Search on ENCODE]
GSM1817197 None Neural crest cell Cranial TFAP2A [Search on ENCODE]
GSM1817199 None Neural crest cell Cranial TFAP2A [Search on ENCODE]
GSM1817200 None Neural crest cell Cranial TFAP2A [Search on ENCODE]
GSM1645715 None Keratinocyte None TP63 [Search on ENCODE]
GSM1645717 None Keratinocyte None POLR2A [Search on ENCODE]
ENCSR482BBZ_1 HEK293 Epithelium Embryonic Kidney GLIS1 [Search on ENCODE]
GSM807391 H9 Embryonic Stem Cell Embryo H2AZ [Search on ENCODE]
GSM2026832 HEK293 Epithelium Embryonic Kidney GLIS1 [Search on ENCODE]
GSM1701828 None Neuronal Progenitor cell None SOX2 [Search on ENCODE]
GSM1842697 HCC1395 None None BRD4 [Search on ENCODE]
GSM1846888 None Patient derived xenograft cells None KMT2D [Search on ENCODE]
GSM1382443 A375 melanoma None HEXIM1 [Search on ENCODE]
GSM1382441 A375 melanoma None CDK9 [Search on ENCODE]
GSM2029581 ZR-75-30 None None EP300 [Search on ENCODE]
GSM2029580 ZR-75-30 None None EP300 [Search on ENCODE]
GSM2350362 JHU-029 None None TP63 [Search on ENCODE]
GSM1661788 A375 Melanoma Cell None HEXIM1 [Search on ENCODE]
GSM1661786 A375 Melanoma Cell None CDK9 [Search on ENCODE]
GSM2330597 SUM159PT Mammary carcinoma cell Breast BRD4 [Search on ENCODE]
GSM2330593 SUM159PT Mammary carcinoma cell Breast BRD4 [Search on ENCODE]
GSM2330589 SUM159PT Mammary carcinoma cell Breast BRD4 [Search on ENCODE]
GSM2330588 SUM159PT Mammary carcinoma cell Breast BRD4 [Search on ENCODE]
GSM2330587 SUM159PT Mammary carcinoma cell Breast BRD4 [Search on ENCODE]
GSM2330584 SUM159PT Mammary carcinoma cell Breast EP300 [Search on ENCODE]
GSM2330582 SUM159PT Mammary carcinoma cell Breast BRD4 [Search on ENCODE]
GSM2330581 SUM159PT Mammary carcinoma cell Breast BRD4 [Search on ENCODE]
GSM2330580 SUM159PT Mammary carcinoma cell Breast BRD4 [Search on ENCODE]
GSM2330550 SUM159PT Mammary carcinoma cell Breast BRD4 [Search on ENCODE]
GSM2214077 7250 Fibroblast None BRD4 [Search on ENCODE]
GSM2359438 A375 melanoma Skin BRD4 [Search on ENCODE]
GSM2359437 A375 melanoma Skin BRD4 [Search on ENCODE]
GSM2359436 A375 melanoma Skin BRD4 [Search on ENCODE]
GSM2278000 MDA-MB-157 mDA None STAT3 [Search on ENCODE]
GSM2278001 MDA-MB-157 mDA None STAT3 [Search on ENCODE]
GSM2278004 HCC70 Epithelium Breast STAT3 [Search on ENCODE]
GSM2278009 MDA-MB-468 mDA None STAT3 [Search on ENCODE]
GSM2274683 None Keratinocyte Foreskin SMC1A [Search on ENCODE]
GSM2897813 None Stromal Cell None GATA2 [Search on ENCODE]
GSM2278010 HCC1143 None None STAT3 [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.