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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 198606222-198606223 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM537668 hES I3 Embryonic Stem Cell Embryo H3K4me1 [Search on ENCODE]
GSM706073 iPS DF 6.9 iPSC None H3K4me1 [Search on ENCODE]
GSM772785 None Neuron None H3K4me1 [Search on ENCODE]
GSM602302 None Neuroectoderm None H3K27ac [Search on ENCODE]
GSM714807 None Neural crest cell Cranial H3K27ac [Search on ENCODE]
GSM669927 None Chondrocyte Cartilage H3K4me1 [Search on ENCODE]
GSM956008 H1 Embryonic Stem Cell Embryo H3K27ac [Search on ENCODE]
GSM1027298 None None Fetal Thymus H3K4me1 [Search on ENCODE]
GSM1112794 None Mesenchymal Stem Cell Bone Marrow H3K27ac [Search on ENCODE]
GSM908957 H1 Embryonic Stem Cell Embryo H3K4me2 [Search on ENCODE]
GSM772808 None Neural Progenitor Cell Brain H3K4me1 [Search on ENCODE]
GSM1252938 CUTLL1 T Lymphocyte Blood H3K27ac [Search on ENCODE]
GSM1252939 CUTLL1 T Lymphocyte Blood H3K27ac [Search on ENCODE]
GSM1252940 CUTLL1 T Lymphocyte Blood H3K27ac [Search on ENCODE]
GSM1272767 WIBR3 Embryonic Stem Cell Embryo H3K4me1 [Search on ENCODE]
GSM1003533 None Astrocyte Brain H3K4me2 [Search on ENCODE]
GSM1399018 None Multiple myeloma None H3K27me3 [Search on ENCODE]
GSM1399262 H1 Embryonic Stem Cell Embryo H3K4me1 [Search on ENCODE]
GSM1521735 None Neural Progenitor Cell None H3K27ac [Search on ENCODE]
GSM1521745 None Neural Progenitor Cell None H3K27ac [Search on ENCODE]
GSM1566554 KB Cell Epithelium HeLa contaminant H3K4me1 [Search on ENCODE]
GSM1817151 None Neural crest cell Cranial H3K27ac [Search on ENCODE]
GSM1817152 None Neural crest cell Cranial H3K27ac [Search on ENCODE]
GSM1817153 None Neural crest cell Cranial H3K27ac [Search on ENCODE]
GSM1817154 None Neural crest cell Cranial H3K27ac [Search on ENCODE]
GSM1817155 None Neural crest cell Cranial H3K27ac [Search on ENCODE]
GSM1817156 None Neural crest cell Cranial H3K27ac [Search on ENCODE]
GSM1817158 None Neural crest cell Cranial H3K27ac [Search on ENCODE]
GSM1817159 None Neural crest cell Cranial H3K27ac [Search on ENCODE]
GSM1817160 None Neural crest cell Cranial H3K27ac [Search on ENCODE]
GSM1817161 None Neural crest cell Cranial H3K27ac [Search on ENCODE]
GSM1918575 K562 Erythroblast Bone Marrow H3K27ac [Search on ENCODE]
GSM1645725 None Keratinocyte None H3K27ac [Search on ENCODE]
GSM1702516 None None Bone Marrow H3K9ac [Search on ENCODE]
GSM1553138 SUM159R None None H3K27ac [Search on ENCODE]
GSM1846882 None Patient derived xenograft cells None H3K27ac [Search on ENCODE]
GSM1846885 None Patient derived xenograft cells None H3K27ac [Search on ENCODE]
GSM2066436 HCC1954 Epithelium Mammary Gland H3K27ac [Search on ENCODE]
GSM2127467 IMR-5/75 Neuroblastoma cell None H3K27ac [Search on ENCODE]
ENCSR092TTO_2 None Glial Cell None H3K27ac [Search on ENCODE]
ENCSR092TTO_3 None Glial Cell None H3K27ac [Search on ENCODE]
ENCSR645BCH_1 None Neural Progenitor Cell None H3K4me2 [Search on ENCODE]
GSM767342 H1 Embryonic Stem Cell Embryo H3K27ac [Search on ENCODE]
GSM767343 H1 Embryonic Stem Cell Embryo H3K27ac [Search on ENCODE]
ENCSR829UDX_2 None Glial Cell None H3K27ac [Search on ENCODE]
ENCSR829UDX_3 None Glial Cell None H3K27ac [Search on ENCODE]
ENCSR842NGQ_5 None Stem cell None H3K27ac [Search on ENCODE]
GSM818031 H1 Embryonic Stem Cell Embryo H3K27ac [Search on ENCODE]
GSM2452104 None Hematopoietic stem and progenitor cell Blood H3K27ac [Search on ENCODE]
GSM2214081 7250 Fibroblast None H3K27ac [Search on ENCODE]
GSM1666383 NHEK Keratinocyte Skin H3K4me1 [Search on ENCODE]
GSM1846901 None Patient derived xenograft cells None H3K4me1 [Search on ENCODE]
GSM1846898 None Patient derived xenograft cells None H3K4me1 [Search on ENCODE]
GSM1846894 None Patient derived xenograft cells None H3K4me1 [Search on ENCODE]
GSM1846890 None Patient derived xenograft cells None H3K4me1 [Search on ENCODE]
GSM1846883 None Patient derived xenograft cells None H3K4me1 [Search on ENCODE]
GSM1831756 None Neuron None H3K4me1 [Search on ENCODE]
GSM2029589 ZR-75-30 None None H3K4me2 [Search on ENCODE]
GSM2228901 None Keratinocyte Foreskin H3K4me1 [Search on ENCODE]
GSM2318734 KOPT-K1 T Lymphocyte Blood H3K27ac [Search on ENCODE]
GSM2029367 H9 Embryonic Stem Cell Embryo H3K4me1 [Search on ENCODE]
GSM2029357 H9 Embryonic Stem Cell Embryo H3K4me1 [Search on ENCODE]
GSM2277173 None None Cord blood H3K4me2 [Search on ENCODE]
GSM2035821 NHEK Keratinocyte Skin H3K4me1 [Search on ENCODE]
GSM2035814 NHEK Keratinocyte Skin H3K4me1 [Search on ENCODE]
GSM2035813 NHEK Keratinocyte Skin H3K4me1 [Search on ENCODE]
GSM1662332 NHEK Keratinocyte Skin H3K4me1 [Search on ENCODE]
GSM2258746 ZR-75-1 None Breast H3K4me1 [Search on ENCODE]
GSM2258788 UACC812 None Breast H3K9ac [Search on ENCODE]
GSM2258782 UACC812 None Breast H3K4me1 [Search on ENCODE]
GSM2258842 HCC1954 None Breast H3K9ac [Search on ENCODE]
GSM1857033 CUTLL1 T Lymphocyte Blood H3K27ac [Search on ENCODE]
GSM2258693 76NF2V None Breast H3K4me1 [Search on ENCODE]
GSM1915010 MNNG Osteosarcoma cell None H3K4me1 [Search on ENCODE]
GSM2865070 None None Retina H3K4me1 [Search on ENCODE]
GSM2258837 HCC1954 None Breast H3K4me1 [Search on ENCODE]
GSM466739 H1 Embryonic Stem Cell Embryo H3K4me1 [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.