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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 198606222-198606223 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM1024609 None Epithelium Mammary Gland DNase [Search on ENCODE]
GSM817215 H1 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM646565 None Epithelium None DNase [Search on ENCODE]
GSM646563 H7 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM753974 None Epithelium Mammary Gland DNase [Search on ENCODE]
GSM753973 None Epithelium Mammary Gland DNase [Search on ENCODE]
GSM909313 H1 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM909312 None Fibroblast Foreskin DNase [Search on ENCODE]
GSM878645 None None Fetal Skin Biceps Left DNase [Search on ENCODE]
GSM878644 None None Fetal Skin Biceps Left DNase [Search on ENCODE]
GSM878623 None Fibroblast Fetal Skin Back DNase [Search on ENCODE]
GSM878652 None None Fetal Brain DNase [Search on ENCODE]
GSM878648 None None Fetal Skin Quadriceps Left DNase [Search on ENCODE]
GSM878639 None None Fetal Muscle Back DNase [Search on ENCODE]
GSM878642 None None Fetal Skin Biceps Right DNase [Search on ENCODE]
GSM878647 None None Fetal Skin Quadriceps Right DNase [Search on ENCODE]
GSM878649 None None Fetal Skin Quadriceps Left DNase [Search on ENCODE]
GSM878640 None None Fetal Skin Upper Back DNase [Search on ENCODE]
GSM878646 None None Fetal Skin Quadriceps Right DNase [Search on ENCODE]
GSM878641 None None Fetal Skin Upper Back DNase [Search on ENCODE]
GSM878650 None None Fetal Brain DNase [Search on ENCODE]
GSM878643 None None Fetal Skin Biceps Right DNase [Search on ENCODE]
GSM878634 None Fibroblast Fetal Skin Scalp DNase [Search on ENCODE]
GSM1027350 None Keratinocyte Foreskin DNase [Search on ENCODE]
GSM817195 None Keratinocyte Foreskin DNase [Search on ENCODE]
GSM817194 None Keratinocyte Foreskin DNase [Search on ENCODE]
GSM817197 None Keratinocyte Foreskin DNase [Search on ENCODE]
GSM817169 None Fibroblast Foreskin DNase [Search on ENCODE]
GSM817196 None Keratinocyte Foreskin DNase [Search on ENCODE]
GSM1014510 None Fibroblast Connective Tissue DNase [Search on ENCODE]
GSM1014535 RPMI-7951 Melanoma Cell Skin DNase [Search on ENCODE]
GSM1014508 HA-sp Astrocyte Spinal Cord DNase [Search on ENCODE]
GSM1014511 None Epithelium Esophagus DNase [Search on ENCODE]
GSM1014531 None Embryonic Fibroblast Foreskin DNase [Search on ENCODE]
GSM1014538 M059J Glial Cell Brain DNase [Search on ENCODE]
GSM849027 None Cortex Kidney DNase [Search on ENCODE]
GSM1220605 None Fibroblast Fetal Skin Back DNase [Search on ENCODE]
GSM1220606 None Fibroblast Fetal Skin Scalp DNase [Search on ENCODE]
GSM1220607 None None Fetal Skin Abdomen DNase [Search on ENCODE]
GSM1220608 None None Fetal Skin Upper Back DNase [Search on ENCODE]
GSM1220609 None None Fetal Skin Biceps Right DNase [Search on ENCODE]
GSM1220610 None None Fetal Skin Quadriceps Right DNase [Search on ENCODE]
GSM1255282 MCF-7 Epithelium Breast DNase [Search on ENCODE]
GSM1338307 None Fibroblast None DNase [Search on ENCODE]
GSM1338308 None Fibroblast None DNase [Search on ENCODE]
GSM1338309 None Fibroblast None DNase [Search on ENCODE]
GSM1338310 None Fibroblast None DNase [Search on ENCODE]
GSM736551 AG09309 Fibroblast Skin DNase [Search on ENCODE]
GSM736616 AG09309 Fibroblast Skin DNase [Search on ENCODE]
GSM736518 BJ Fibroblast Skin DNase [Search on ENCODE]
GSM736596 BJ Fibroblast Skin DNase [Search on ENCODE]
GSM736610 H7 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM736638 H7 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM1024755 H7 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM1024750 None Pericyte Umbilical Vein DNase [Search on ENCODE]
GSM1024769 None Smooth Muscle Cell Umbilical Vein DNase [Search on ENCODE]
GSM736515 None Fibroblast Eye DNase [Search on ENCODE]
GSM736532 None Epithelium Esophagus DNase [Search on ENCODE]
GSM736572 None Embryonic Fibroblast Foreskin DNase [Search on ENCODE]
GSM736602 None Embryonic Fibroblast Foreskin DNase [Search on ENCODE]
GSM736549 None Cortex Kidney DNase [Search on ENCODE]
GSM736557 None Cortex Kidney DNase [Search on ENCODE]
GSM736491 None Fibroblast Connective Tissue DNase [Search on ENCODE]
GSM736534 None Fibroblast Connective Tissue DNase [Search on ENCODE]
GSM1024773 M059J Glial Cell Brain DNase [Search on ENCODE]
GSM1024794 M059J Glial Cell Brain DNase [Search on ENCODE]
GSM736545 NHEK Keratinocyte Skin DNase [Search on ENCODE]
GSM1024751 NT2-D1 None Embryo DNase [Search on ENCODE]
GSM1024795 NT2-D1 None Embryo DNase [Search on ENCODE]
GSM1024779 RPMI-7951 Melanoma Cell Skin DNase [Search on ENCODE]
GSM1024793 RPMI-7951 Melanoma Cell Skin DNase [Search on ENCODE]
GSM736543 RPTEC Epithelium Kidney DNase [Search on ENCODE]
GSM736497 SKMC Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM736522 SK-N-MC None Brain DNase [Search on ENCODE]
GSM763534 BJ Fibroblast Skin DNase [Search on ENCODE]
GSM1645709 None Keratinocyte None ATAC-seq [Search on ENCODE]
GSM1817203 None Neural crest cell Cranial ATAC-seq [Search on ENCODE]
GSM1817204 None Neural crest cell Cranial ATAC-seq [Search on ENCODE]
GSM1817205 None Neural crest cell Cranial ATAC-seq [Search on ENCODE]
GSM1817206 None Neural crest cell Cranial ATAC-seq [Search on ENCODE]
GSM1817207 None Neural crest cell Cranial ATAC-seq [Search on ENCODE]
GSM2035768 NHEK Keratinocyte Skin ATAC-seq [Search on ENCODE]
GSM1939272 None Stem cell None ATAC-seq [Search on ENCODE]
GSM2113547 SHEP-21N Neuroblastoma cell Bone Marrow ATAC-seq [Search on ENCODE]
GSM1662255 None Epithelium Corneal Epithelium ATAC-seq [Search on ENCODE]
ENCSR782XFY_1 None None Eye DNase [Search on ENCODE]
ENCSR782XFY_2 None None Eye DNase [Search on ENCODE]
ENCSR240TPI_1 BJ Fibroblast Skin DNase [Search on ENCODE]
ENCSR240TPI_2 BJ Fibroblast Skin DNase [Search on ENCODE]
ENCSR595CSH None None Brain DNase [Search on ENCODE]
ENCSR475VQD_1 None None Brain DNase [Search on ENCODE]
ENCSR548MMD_1 BJ Fibroblast Skin DNase [Search on ENCODE]
ENCSR548MMD_2 BJ Fibroblast Skin DNase [Search on ENCODE]
ENCSR963ALV None Neural Progenitor Cell None DNase [Search on ENCODE]
ENCSR017OZH_1 None Embryonic Stem Cell None DNase [Search on ENCODE]
ENCSR314EZY_2 None iPSC None DNase [Search on ENCODE]
ENCSR474GZQ_1 None None Retina DNase [Search on ENCODE]
ENCSR621ENC_1 None None Retina DNase [Search on ENCODE]
ENCSR678ILN_1 None Stem cell None DNase [Search on ENCODE]
ENCSR678ILN_2 None Stem cell None DNase [Search on ENCODE]
ENCSR691MQJ_1 EL None None DNase [Search on ENCODE]
ENCSR691MQJ_2 EL None None DNase [Search on ENCODE]
ENCSR691MQJ_3 EL None None DNase [Search on ENCODE]
ENCSR746ZPP_1 None iPSC None DNase [Search on ENCODE]
ENCSR754LIN_1 None Embryonic Stem Cell None DNase [Search on ENCODE]
ENCSR820ICX_1 None None Retina DNase [Search on ENCODE]
GSM2174882 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2174881 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2174880 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2174879 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2174878 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2174877 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2174876 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2174875 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2098979 HFF Fibroblast Foreskin ATAC-seq [Search on ENCODE]
GSM2241147 T47D Epithelium Mammary Gland ATAC-seq [Search on ENCODE]
GSM2386577 H1 Embryonic Stem Cell Embryo ATAC-seq [Search on ENCODE]
GSM2575302 WM989 melanoma None ATAC-seq [Search on ENCODE]
GSM2575297 WM989 melanoma None ATAC-seq [Search on ENCODE]
GSM2575295 WM989 melanoma None ATAC-seq [Search on ENCODE]
GSM2575288 WM989 melanoma None ATAC-seq [Search on ENCODE]
GSM2257296 H7 Embryonic Stem Cell Embryo ATAC-seq [Search on ENCODE]
GSM2476339 SKmel147 melanoma None ATAC-seq [Search on ENCODE]
GSM2264815 C20 hiPSC-derived cells None ATAC-seq [Search on ENCODE]
GSM2401442 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2401443 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2977486 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2977487 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2977488 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2845469 RUES2 Embryonic Stem Cell None ATAC-seq [Search on ENCODE]
GSM2579552 None Cortex None ATAC-seq [Search on ENCODE]
GSM2977489 HUES64 Embryonic Stem Cell Embryo ATAC-seq [Search on ENCODE]
GSM1820087 None Cortical Neuron None ATAC-seq [Search on ENCODE]
GSM1820082 None Cortical Neuron None ATAC-seq [Search on ENCODE]
GSM1820083 None Cortical Neuron None ATAC-seq [Search on ENCODE]
GSM2264823 None hESC None ATAC-seq [Search on ENCODE]
GSM2430672 BJ Fibroblast Skin ATAC-seq [Search on ENCODE]
GSM2898792 None Stem cell None ATAC-seq [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.