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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 151670049-151670839 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM1014536 T47D Epithelium Mammary Gland DNase [Search on ENCODE]
GSM1255277 LNCaP Epithelium Prostate DNase [Search on ENCODE]
GSM736565 LNCaP Epithelium Prostate DNase [Search on ENCODE]
GSM1024767 MCF-7 Epithelium Breast DNase [Search on ENCODE]
GSM1024761 T47D Epithelium Mammary Gland DNase [Search on ENCODE]
GSM1406342 None Macrophage Blood DNase [Search on ENCODE]
GSM1406347 None Macrophage Blood DNase [Search on ENCODE]
GSM1406357 None Macrophage Blood DNase [Search on ENCODE]
GSM1858670 ZR-75-1 Embryonic Stem Cell Breast DNase [Search on ENCODE]
GSM1858671 ZR-75-1 Embryonic Stem Cell Breast DNase [Search on ENCODE]
GSM1858672 ZR-75-1 Embryonic Stem Cell Breast DNase [Search on ENCODE]
GSM1858669 ZR-75-1 Embryonic Stem Cell Breast DNase [Search on ENCODE]
GSM2679882 None Monocyte Blood ATAC-seq [Search on ENCODE]
GSM2679868 None Monocyte Blood ATAC-seq [Search on ENCODE]
GSM2592781 None Macrophage Blood ATAC-seq [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.