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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 32264483-32264484 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM898060 None B Lymphocyte None BCL6 [Search on ENCODE]
GSM763428 OCI-Ly1 B cell lymphoma Bone Marrow POLR2A [Search on ENCODE]
GSM733767 GM12878 B Lymphocyte Blood H2AZ [Search on ENCODE]
GSM803538 GM12878 B Lymphocyte Blood BATF [Search on ENCODE]
GSM1010893 GM12878 B Lymphocyte Blood RUNX3 [Search on ENCODE]
GSM1577749 None T Lymphocyte Blood STAT5B [Search on ENCODE]
ENCSR199WXF_1 GM12878 B Lymphocyte Blood EED [Search on ENCODE]
ENCSR199WXF_2 GM12878 B Lymphocyte Blood EED [Search on ENCODE]
ENCSR395HWC_2 K562 Erythroblast Bone Marrow IKZF1 [Search on ENCODE]
GSM2026807 HEK293 Epithelium Embryonic Kidney ZBTB6 [Search on ENCODE]
GSM2026808 HEK293 Epithelium Embryonic Kidney ZBTB6 [Search on ENCODE]
GSM2212239 SEM B Lymphocyte None MED1 [Search on ENCODE]
GSM2386723 None B Lymphocyte Tonsil CREBBP [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.