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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 234887289-234887290 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM599838 None Adipocyte Adipose CEBPA [Search on ENCODE]
GSM894081 H2171 Epithelium Lung MED1 [Search on ENCODE]
GSM894099 H128 Epithelium Lung MAX [Search on ENCODE]
GSM894077 U87 None Brain MAX [Search on ENCODE]
GSM894082 U87 None Brain MED1 [Search on ENCODE]
GSM894104 H2171 Epithelium Lung POLR2A [Search on ENCODE]
GSM894103 H2171 Epithelium Lung MAX [Search on ENCODE]
GSM894102 H2171 Epithelium Lung MYC [Search on ENCODE]
GSM1008617 H2171 Epithelium Lung MAX [Search on ENCODE]
GSM1008620 H2171 Epithelium Lung MYC [Search on ENCODE]
GSM1038270 H2171 Epithelium Lung BRD4 [Search on ENCODE]
GSM999792 None Leiomyoma Cell None PR [Search on ENCODE]
GSM1195568 H2171 Epithelium Lung POLR2A [Search on ENCODE]
GSM1195567 H2171 Epithelium Lung BRD4 [Search on ENCODE]
GSM1195551 U87 None Brain BRD4 [Search on ENCODE]
GSM1195569 H2171 Epithelium Lung BRD4 [Search on ENCODE]
GSM1195570 H2171 Epithelium Lung POLR2A [Search on ENCODE]
GSM1176699 HEK293 Epithelium Embryonic Kidney NR3C1 [Search on ENCODE]
GSM1176701 HEK293 Epithelium Embryonic Kidney NR3C1 [Search on ENCODE]
GSM1176704 HEK293 Epithelium Embryonic Kidney SUMO2 [Search on ENCODE]
GSM1176705 HEK293 Epithelium Embryonic Kidney SUMO2 [Search on ENCODE]
GSM1176706 HEK293 Epithelium Embryonic Kidney SUMO2 [Search on ENCODE]
GSM1176707 HEK293 Epithelium Embryonic Kidney SUMO2 [Search on ENCODE]
GSM534493 None Stromal Cell Adipose PPARG [Search on ENCODE]
GSM1003488 NHEK Keratinocyte Skin H2AZ [Search on ENCODE]
GSM1164151 DU145 Epithelium Prostate AR [Search on ENCODE]
GSM1308229 HEK293 Epithelium Embryonic Kidney AR [Search on ENCODE]
GSM1308230 HEK293 Epithelium Embryonic Kidney AR [Search on ENCODE]
GSM1308232 HEK293 Epithelium Embryonic Kidney AR [Search on ENCODE]
GSM1308233 HEK293 Epithelium Embryonic Kidney AR [Search on ENCODE]
GSM1463930 None Myoblast None MED1 [Search on ENCODE]
GSM1503215 None None Coronary artery smooth muscle TCF21 [Search on ENCODE]
GSM1566728 None Adipocyte None MED1 [Search on ENCODE]
GSM1566729 None Adipocyte None MED1 [Search on ENCODE]
GSM1566731 None Adipocyte None MED1 [Search on ENCODE]
GSM1566732 None Adipocyte None RELA [Search on ENCODE]
GSM1566733 None Adipocyte None RELA [Search on ENCODE]
GSM1566734 None Adipocyte None RELA [Search on ENCODE]
GSM1358397 None None Prostate AR [Search on ENCODE]
GSM1358400 None None Prostate AR [Search on ENCODE]
GSM1358401 None None Prostate AR [Search on ENCODE]
GSM1358402 None None Prostate AR [Search on ENCODE]
GSM1358405 None None Prostate AR [Search on ENCODE]
GSM1358410 None None Prostate AR [Search on ENCODE]
GSM1716769 LHSAR Epithelium Prostate AR [Search on ENCODE]
GSM1716770 LHSAR Epithelium Prostate AR [Search on ENCODE]
GSM1893930 MOLM-14 Myeloid Cell None CDK8 [Search on ENCODE]
GSM1607525 U2OS None Bone NR3C1 [Search on ENCODE]
GSM1607526 U2OS None Bone NR3C1 [Search on ENCODE]
GSM1607528 U2OS None Bone NR3C1 [Search on ENCODE]
ENCSR362VCG_1 None Neuron None POU5F1 [Search on ENCODE]
ENCSR803JLV_1 HEK293 Epithelium Embryonic Kidney IKZF2 [Search on ENCODE]
ENCSR803JLV_2 HEK293 Epithelium Embryonic Kidney IKZF2 [Search on ENCODE]
ENCSR839SFJ_1 None Neuron None SMARCA4 [Search on ENCODE]
ENCSR839SFJ_2 None Neuron None SMARCA4 [Search on ENCODE]
ENCSR889GGV_1 None Neuron None POLR2AphosphoS5 [Search on ENCODE]
ENCSR889GGV_2 None Neuron None POLR2AphosphoS5 [Search on ENCODE]
ENCSR919CZU_1 HEK293 Epithelium Embryonic Kidney EGR2 [Search on ENCODE]
GSM2026802 HEK293 Epithelium Embryonic Kidney EGR3 [Search on ENCODE]
GSM1904597 None Cortex Embryonic Kidney SIX2 [Search on ENCODE]
GSM2103046 BEAS-2B Epithelium Lung NR3C1 [Search on ENCODE]
GSM2103045 BEAS-2B Epithelium Lung NR3C1 [Search on ENCODE]
GSM2103042 BEAS-2B Epithelium Lung NR3C1 [Search on ENCODE]
GSM2103041 BEAS-2B Epithelium Lung NR3C1 [Search on ENCODE]
GSM1970531 None Cortex Kidney SIX2 [Search on ENCODE]
GSM1970530 None Cortex Kidney SIX2 [Search on ENCODE]
GSM1970528 None Cortex Kidney SIX2 [Search on ENCODE]
GSM1700641 NCI-H82 None None ASCL1 [Search on ENCODE]
GSM2330603 SUM159PT Mammary carcinoma cell Breast BRD4 [Search on ENCODE]
GSM2330596 SUM159PT Mammary carcinoma cell Breast BRD4 [Search on ENCODE]
GSM2330582 SUM159PT Mammary carcinoma cell Breast BRD4 [Search on ENCODE]
GSM2330580 SUM159PT Mammary carcinoma cell Breast BRD4 [Search on ENCODE]
GSM2432982 D283 Med None None NEUROD1 [Search on ENCODE]
GSM2432981 D283 Med None None OTX2 [Search on ENCODE]
GSM2432980 D283 Med None None OTX2 [Search on ENCODE]
GSM2432979 D-341 None None NEUROD1 [Search on ENCODE]
GSM2432978 D-341 None None NEUROD1 [Search on ENCODE]
GSM2432977 D-341 None None NEUROD1 [Search on ENCODE]
GSM2432973 D-341 None None OTX2 [Search on ENCODE]
GSM2432971 D-341 None None OTX2 [Search on ENCODE]
GSM2432969 D-341 None None OTX2 [Search on ENCODE]
GSM2432967 D-341 None None OTX2 [Search on ENCODE]
GSM2432964 D-341 None None OTX2 [Search on ENCODE]
GSM2432962 D-341 None None OTX2 [Search on ENCODE]
GSM2432960 D-341 None None OTX2 [Search on ENCODE]
GSM2432958 D-341 None None OTX2 [Search on ENCODE]
GSM2432952 D-341 None None NEUROD1 [Search on ENCODE]
GSM2432951 D-341 None None OTX2 [Search on ENCODE]
GSM2432950 D-341 None None OTX2 [Search on ENCODE]
GSM2432944 D283 Med None None NEUROD1 [Search on ENCODE]
GSM2432943 D283 Med None None OTX2 [Search on ENCODE]
GSM2432942 D283 Med None None OTX2 [Search on ENCODE]
GSM1970152 None Fibroblast Fetal Lung NEUROG2 [Search on ENCODE]
GSM2410317 SK-N-SH Neuroblastoma cell Brain EBF3 [Search on ENCODE]
GSM2550216 None Fibroblast None EP300 [Search on ENCODE]
GSM2519945 None None Muscle NR3C1 [Search on ENCODE]
GSM2519947 None None Muscle NR3C1 [Search on ENCODE]
GSM2519949 None None Muscle NR3C1 [Search on ENCODE]
GSM2519948 None None Muscle NR3C1 [Search on ENCODE]
GSM1711858 MKL-1 Merkel cell carcinoma None MAX [Search on ENCODE]
GSM2519950 None None Muscle KLF15 [Search on ENCODE]
GSM2519951 None None Muscle KLF15 [Search on ENCODE]
GSM2735380 MCF-10A Epithelium Breast NR3C1 [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.