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HIV VIS-Cistrome Factor Overlapped Record Details

This pages show details of Cistrome factor-ralated samples which overlapped this VIS.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale."


Location chr1: 234887289-234887290 (GRCh38)
GSMID or ENCODE Cell line Cell type Tissue type Factor
GSM701536 None None Fetal Muscle Back DNase [Search on ENCODE]
GSM701535 None None Fetal Muscle Arm DNase [Search on ENCODE]
GSM701532 None Cortex Fetal Kidney DNase [Search on ENCODE]
GSM701511 None Cortex Fetal Kidney DNase [Search on ENCODE]
GSM701506 None None Fetal Muscle Arm DNase [Search on ENCODE]
GSM701502 None Cortex Fetal Kidney DNase [Search on ENCODE]
GSM665834 None Epithelium Kidney DNase [Search on ENCODE]
GSM817211 None Cortex Fetal Kidney Left DNase [Search on ENCODE]
GSM817217 None None Fetal Muscle Back DNase [Search on ENCODE]
GSM817216 None None Fetal Muscle Arm DNase [Search on ENCODE]
GSM817208 None Epithelium Fetal Renal Pelvis Right DNase [Search on ENCODE]
GSM817206 None None Fetal Muscle Leg DNase [Search on ENCODE]
GSM817209 None Epithelium Fetal Renal Pelvis Left DNase [Search on ENCODE]
GSM1059531 None None Fetal Muscle Back DNase [Search on ENCODE]
GSM1059534 None None Fetal Muscle Trunk DNase [Search on ENCODE]
GSM1059533 None None Fetal Muscle Leg DNase [Search on ENCODE]
GSM646564 None Fibroblast Skin DNase [Search on ENCODE]
GSM646565 None Epithelium None DNase [Search on ENCODE]
GSM646560 None Epithelium Amnion DNase [Search on ENCODE]
GSM646561 None Epithelium Mammary Gland DNase [Search on ENCODE]
GSM909314 H1 Embryonic Stem Cell Embryo DNase [Search on ENCODE]
GSM909312 None Fibroblast Foreskin DNase [Search on ENCODE]
GSM1102740 None Epithelium Fetal Kidney DNase [Search on ENCODE]
GSM878620 None None Fetal Muscle Arm DNase [Search on ENCODE]
GSM878624 None Fibroblast Fetal Skin Back DNase [Search on ENCODE]
GSM878626 None None Fetal Muscle Leg DNase [Search on ENCODE]
GSM878622 None None Fetal Muscle Leg DNase [Search on ENCODE]
GSM878619 None None Fetal Muscle Arm DNase [Search on ENCODE]
GSM878653 None None Fetal Muscle Leg DNase [Search on ENCODE]
GSM878627 None None Fetal Thymus DNase [Search on ENCODE]
GSM878633 None Fibroblast Fetal Skin Scalp DNase [Search on ENCODE]
GSM878611 None None Fetal Muscle Back DNase [Search on ENCODE]
GSM878662 None Epithelium Fetal Renal Pelvis DNase [Search on ENCODE]
GSM878632 None None Fetal Muscle Back DNase [Search on ENCODE]
GSM878625 None None Fetal Muscle Arm DNase [Search on ENCODE]
GSM878641 None None Fetal Skin Upper Back DNase [Search on ENCODE]
GSM878654 None None Fetal Muscle Trunk DNase [Search on ENCODE]
GSM878667 None Cortex Fetal Kidney DNase [Search on ENCODE]
GSM878630 None Epithelium Fetal Heart DNase [Search on ENCODE]
GSM878664 None None Fetal Muscle Trunk DNase [Search on ENCODE]
GSM878634 None Fibroblast Fetal Skin Scalp DNase [Search on ENCODE]
GSM1027330 None None Fetal Muscle Back DNase [Search on ENCODE]
GSM1027347 None Epithelium Fetal Kidney Left DNase [Search on ENCODE]
GSM1027349 None None Fetal Muscle Arm DNase [Search on ENCODE]
GSM1027317 None Epithelium Fetal Renal Pelvis DNase [Search on ENCODE]
GSM1027314 None Cortex Fetal Kidney DNase [Search on ENCODE]
GSM1027329 None Epithelium Fetal Kidney DNase [Search on ENCODE]
GSM1027324 None Epithelium Fetal Renal Pelvis DNase [Search on ENCODE]
GSM1027322 None Epithelium Fetal Heart DNase [Search on ENCODE]
GSM1027340 None Epithelium Fetal Kidney Right DNase [Search on ENCODE]
GSM1027336 None Epithelium Fetal Kidney Left DNase [Search on ENCODE]
GSM1027321 None None Psoas Muscle DNase [Search on ENCODE]
GSM1027337 None Epithelium Fetal Kidney Right DNase [Search on ENCODE]
GSM817192 None Epithelium Fetal Renal Pelvis Right DNase [Search on ENCODE]
GSM817182 None None Fetal Muscle Back DNase [Search on ENCODE]
GSM817179 None None Fetal Muscle Leg DNase [Search on ENCODE]
GSM817193 None Epithelium Fetal Renal Pelvis Left DNase [Search on ENCODE]
GSM817178 None None Fetal Muscle Arm DNase [Search on ENCODE]
GSM1014510 None Fibroblast Connective Tissue DNase [Search on ENCODE]
GSM1014539 LHCN-M2 Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM1014512 NHDF-neo Fibroblast Skin DNase [Search on ENCODE]
GSM1014514 None Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM1014518 None Embryonic Fibroblast Heart DNase [Search on ENCODE]
GSM1014527 AG10803 Fibroblast Skin DNase [Search on ENCODE]
GSM1014524 LHCN-M2 Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM1014530 None Fibroblast Heart DNase [Search on ENCODE]
GSM1014531 None Embryonic Fibroblast Foreskin DNase [Search on ENCODE]
GSM723023 None Epithelium Fetal Heart DNase [Search on ENCODE]
GSM723024 IMR90 Fibroblast Lung DNase [Search on ENCODE]
GSM774203 None Epithelium Fetal Heart DNase [Search on ENCODE]
GSM774224 None None Fetal Muscle Back DNase [Search on ENCODE]
GSM774223 None None Fetal Muscle Arm DNase [Search on ENCODE]
GSM774241 None Fibroblast Foreskin DNase [Search on ENCODE]
GSM774234 None None Fetal Muscle Arm DNase [Search on ENCODE]
GSM774235 None None Fetal Muscle Back DNase [Search on ENCODE]
GSM774240 None Fibroblast Foreskin DNase [Search on ENCODE]
GSM849031 None Fibroblast Pulmonary Artery DNase [Search on ENCODE]
GSM849029 None Fibroblast Umbilical Vein DNase [Search on ENCODE]
GSM1220605 None Fibroblast Fetal Skin Back DNase [Search on ENCODE]
GSM1220606 None Fibroblast Fetal Skin Scalp DNase [Search on ENCODE]
GSM1220608 None None Fetal Skin Upper Back DNase [Search on ENCODE]
GSM1220609 None None Fetal Skin Biceps Right DNase [Search on ENCODE]
GSM1338308 None Fibroblast None DNase [Search on ENCODE]
GSM1338309 None Fibroblast None DNase [Search on ENCODE]
GSM1338310 None Fibroblast None DNase [Search on ENCODE]
GSM736518 BJ Fibroblast Skin DNase [Search on ENCODE]
GSM736631 None Epithelium Amnion DNase [Search on ENCODE]
GSM736494 None Embryonic Fibroblast Heart DNase [Search on ENCODE]
GSM736541 None Epithelium Mammary Gland DNase [Search on ENCODE]
GSM736628 None Epithelium Mammary Gland DNase [Search on ENCODE]
GSM736555 None Fibroblast Pulmonary Artery DNase [Search on ENCODE]
GSM736560 None Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM736534 None Fibroblast Connective Tissue DNase [Search on ENCODE]
GSM1024787 LHCN-M2 Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM1024786 LHCN-M2 Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM736520 NHDF-Ad Fibroblast Skin DNase [Search on ENCODE]
GSM736497 SKMC Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM736593 SKMC Myoblast Skeletal Muscle DNase [Search on ENCODE]
GSM736495 WERI-Rb-1 None Eye DNase [Search on ENCODE]
GSM736636 WERI-Rb-1 None Eye DNase [Search on ENCODE]
GSM763534 BJ Fibroblast Skin DNase [Search on ENCODE]
GSM1443801 hMADS-3 Adipocyte Adipose DNase [Search on ENCODE]
GSM1566739 None Adipocyte None DNase [Search on ENCODE]
GSM1662258 None Fibroblast None ATAC-seq [Search on ENCODE]
GSM2147624 NCI-H524 Epithelium Lung ATAC-seq [Search on ENCODE]
GSM2147625 NCI-H524 Epithelium Lung ATAC-seq [Search on ENCODE]
ENCSR782XFY_1 None None Eye DNase [Search on ENCODE]
ENCSR782XFY_2 None None Eye DNase [Search on ENCODE]
ENCSR759UNY_1 None None Tongue DNase [Search on ENCODE]
ENCSR548MMD_1 BJ Fibroblast Skin DNase [Search on ENCODE]
ENCSR559WMK None None Tongue DNase [Search on ENCODE]
ENCSR705CNJ_2 None None Heart DNase [Search on ENCODE]
ENCSR910OQF_1 None None Spinal Cord DNase [Search on ENCODE]
ENCSR000FFJ SJCRH30 Fibroblast Muscle DNase [Search on ENCODE]
ENCSR066WZJ_1 None None Kidney DNase [Search on ENCODE]
ENCSR626RVD_1 None Neuron None DNase [Search on ENCODE]
ENCSR691MQJ_1 EL None None DNase [Search on ENCODE]
ENCSR804RSI_1 None None Heart DNase [Search on ENCODE]
GSM816636 None None Brain DNase [Search on ENCODE]
GSM1876024 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM1876023 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
GSM1876022 None Smooth Muscle Cell Coronary artery smooth muscle ATAC-seq [Search on ENCODE]
Contents
Description
  • Overlapped Record Details
An overlapped record means a match between VIS and 1 of 3 Cistrome factor (histone modification, transcription factor binding site and chromatin accessibility), more specifically, this match includes at least 1 overlap between this VIS and 1 Cistrome factor-related sample from 1 of 3 Cistrome factor data. So one VIS may have several overlaps with multiple Cistrome factor-related samples, the associated factor and overlap amount of samples could indicate that the virus integration site is a potentially functional DNA element.